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gnu: r-mzid: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-mzid): Move from here...
* gnu/packages/bioconductor.scm (r-mzid): ...to here.
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zimoun 2021-05-21 22:25:47 +02:00 committed by Ricardo Wurmus
parent ad46c8aa7f
commit 7756e08b44
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2 changed files with 31 additions and 31 deletions
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31
gnu/packages/bioconductor.scm
View file

@ -2731,6 +2731,37 @@ (define-public r-msnid
and irregular enzymatic cleavages, mass measurement accuracy, etc.")
(license license:artistic2.0)))
(define-public r-mzid
(package
(name "r-mzid")
(version "1.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "mzID" version))
(sha256
(base32
"0s7d6cz1li7v3ni6n6hrdspl93yiyr283kmbbd3hhkfgzgx6kpq2"))))
(properties `((upstream-name . "mzID")))
(build-system r-build-system)
(propagated-inputs
`(("r-doparallel" ,r-doparallel)
("r-foreach" ,r-foreach)
("r-iterators" ,r-iterators)
("r-plyr" ,r-plyr)
("r-protgenerics" ,r-protgenerics)
("r-xml" ,r-xml)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/mzID")
(synopsis "Parser for mzIdentML files")
(description
"This package provides a parser for mzIdentML files implemented using the
XML package. The parser tries to be general and able to handle all types of
mzIdentML files with the drawback of having less pretty output than a vendor
specific parser.")
(license license:gpl2+)))
(define-public r-pcamethods
(package
(name "r-pcamethods")

31
gnu/packages/bioinformatics.scm
View file

@ -9196,37 +9196,6 @@ (define-public r-vsn
and specific in detecting differential transcription.")
(license license:artistic2.0)))
(define-public r-mzid
(package
(name "r-mzid")
(version "1.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "mzID" version))
(sha256
(base32
"0s7d6cz1li7v3ni6n6hrdspl93yiyr283kmbbd3hhkfgzgx6kpq2"))))
(properties `((upstream-name . "mzID")))
(build-system r-build-system)
(propagated-inputs
`(("r-doparallel" ,r-doparallel)
("r-foreach" ,r-foreach)
("r-iterators" ,r-iterators)
("r-plyr" ,r-plyr)
("r-protgenerics" ,r-protgenerics)
("r-xml" ,r-xml)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/mzID")
(synopsis "Parser for mzIdentML files")
(description
"This package provides a parser for mzIdentML files implemented using the
XML package. The parser tries to be general and able to handle all types of
mzIdentML files with the drawback of having less pretty output than a vendor
specific parser.")
(license license:gpl2+)))
(define-public r-aroma-light
(package
(name "r-aroma-light")