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gnu: r-copywriter: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-copywriter): Move from here...
* gnu/packages/bioconductor.scm (r-copywriter): ...to here.
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zimoun 2021-05-21 22:26:21 +02:00 committed by Ricardo Wurmus
parent 36cb01066c
commit 7ab44aeed6
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2 changed files with 40 additions and 40 deletions
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40
gnu/packages/bioconductor.scm
View file

@ -2500,6 +2500,46 @@ (define-public r-complexheatmap
self-defined annotation graphics.")
(license license:gpl2+)))
(define-public r-copywriter
(package
(name "r-copywriter")
(version "2.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "CopywriteR" version))
(sha256
(base32
"060p6l6l8i6b15hyyz5v5kkxih3h4wcciixii51m9mn82z23xr2f"))))
(properties `((upstream-name . "CopywriteR")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocparallel" ,r-biocparallel)
("r-chipseq" ,r-chipseq)
("r-copyhelper" ,r-copyhelper)
("r-data-table" ,r-data-table)
("r-dnacopy" ,r-dnacopy)
("r-futile-logger" ,r-futile-logger)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-gtools" ,r-gtools)
("r-iranges" ,r-iranges)
("r-matrixstats" ,r-matrixstats)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://github.com/PeeperLab/CopywriteR")
(synopsis "Copy number information from targeted sequencing")
(description
"CopywriteR extracts DNA copy number information from targeted sequencing
by utilizing off-target reads. It allows for extracting uniformly distributed
copy number information, can be used without reference, and can be applied to
sequencing data obtained from various techniques including chromatin
immunoprecipitation and target enrichment on small gene panels. Thereby,
CopywriteR constitutes a widely applicable alternative to available copy
number detection tools.")
(license license:gpl2)))
(define-public r-deseq
(package
(name "r-deseq")

40
gnu/packages/bioinformatics.scm
View file

@ -8486,46 +8486,6 @@ (define-public variant-tools
manipulate and analyze genetic variants.")
(license license:gpl3+)))
(define-public r-copywriter
(package
(name "r-copywriter")
(version "2.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "CopywriteR" version))
(sha256
(base32
"060p6l6l8i6b15hyyz5v5kkxih3h4wcciixii51m9mn82z23xr2f"))))
(properties `((upstream-name . "CopywriteR")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocparallel" ,r-biocparallel)
("r-chipseq" ,r-chipseq)
("r-copyhelper" ,r-copyhelper)
("r-data-table" ,r-data-table)
("r-dnacopy" ,r-dnacopy)
("r-futile-logger" ,r-futile-logger)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-gtools" ,r-gtools)
("r-iranges" ,r-iranges)
("r-matrixstats" ,r-matrixstats)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://github.com/PeeperLab/CopywriteR")
(synopsis "Copy number information from targeted sequencing")
(description
"CopywriteR extracts DNA copy number information from targeted sequencing
by utilizing off-target reads. It allows for extracting uniformly distributed
copy number information, can be used without reference, and can be applied to
sequencing data obtained from various techniques including chromatin
immunoprecipitation and target enrichment on small gene panels. Thereby,
CopywriteR constitutes a widely applicable alternative to available copy
number detection tools.")
(license license:gpl2)))
(define-public r-methylkit
(package
(name "r-methylkit")