gnu: Add fastahack.

* gnu/packages/bioinformatics.scm (fastahack): New variable.
This commit is contained in:
Pierre Neidhardt 2019-05-18 19:26:38 +02:00 committed by Efraim Flashner
parent 70782dddff
commit 7d71557d4d
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@ -14962,3 +14962,36 @@ (define-public fsom
(description "A tiny C library for managing SOM (Self-Organizing Maps)
neural networks.")
(license license:gpl3))))
(define-public fastahack
(let ((commit "c68cebb4f2e5d5d2b70cf08fbdf1944e9ab2c2dd"))
(package
(name "fastahack")
(version (git-version "0.0.0" "1" commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/ekg/fastahack/")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0hfdv67l9g611i2ck4l92pd6ygmsp9g1ph4zx1ni7qkpsikf0l19"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15
#:phases
(modify-phases %standard-phases
(delete 'configure) ; There is no configure phase.
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
(install-file "fastahack" bin))
#t)))))
(home-page "https://github.com/ekg/fastahack")
(synopsis "Indexing and sequence extraction from FASTA files")
(description "Fastahack is a small application for indexing and
extracting sequences and subsequences from FASTA files. The included library
provides a FASTA reader and indexer that can be embedded into applications
which would benefit from directly reading subsequences from FASTA files. The
library automatically handles index file generation and use.")
(license (list license:expat license:gpl2)))))