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gnu: r-gqtlstats: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here...
* gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.
This commit is contained in:
zimoun 2020-12-23 19:06:34 +01:00 committed by Ricardo Wurmus
parent 61ec8928c7
commit 81f481d6cd
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GPG key ID: 197A5888235FACAC
2 changed files with 47 additions and 47 deletions
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47
gnu/packages/bioconductor.scm
View file

@ -9308,6 +9308,53 @@ (define-public r-erma
by Ernst and Kellis.")
(license license:artistic2.0)))
(define-public r-gqtlbase
(package
(name "r-gqtlbase")
(version "1.21.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gQTLBase" version))
(sha256
(base32
"0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh"))))
(properties `((upstream-name . "gQTLBase")))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
;; This is an upstream bug.
(add-after 'unpack 'fix-imports
(lambda _
(substitute* "NAMESPACE"
((".*maxffmode.*") "")
(("importFrom\\(ff,.*") "import(ff)\n"))
#t)))))
(propagated-inputs
`(("r-batchjobs" ,r-batchjobs)
("r-bbmisc" ,r-bbmisc)
("r-biocgenerics" ,r-biocgenerics)
("r-bit" ,r-bit)
("r-doparallel" ,r-doparallel)
("r-ff" ,r-ff)
("r-ffbase" ,r-ffbase)
("r-foreach" ,r-foreach)
("r-genomicfiles" ,r-genomicfiles)
("r-genomicranges" ,r-genomicranges)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/gQTLBase")
(synopsis "Infrastructure for eQTL, mQTL and similar studies")
(description
"The purpose of this package is to simplify the storage and interrogation
of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL,
and more.")
(license license:artistic2.0)))
(define-public r-gqtlstats
(package
(name "r-gqtlstats")

47
gnu/packages/bioinformatics.scm
View file

@ -10549,53 +10549,6 @@ (define-public r-ggbio
interval to data view, mismatch pileup, and several splicing summaries.")
(license license:artistic2.0)))
(define-public r-gqtlbase
(package
(name "r-gqtlbase")
(version "1.21.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gQTLBase" version))
(sha256
(base32
"0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh"))))
(properties `((upstream-name . "gQTLBase")))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
;; This is an upstream bug.
(add-after 'unpack 'fix-imports
(lambda _
(substitute* "NAMESPACE"
((".*maxffmode.*") "")
(("importFrom\\(ff,.*") "import(ff)\n"))
#t)))))
(propagated-inputs
`(("r-batchjobs" ,r-batchjobs)
("r-bbmisc" ,r-bbmisc)
("r-biocgenerics" ,r-biocgenerics)
("r-bit" ,r-bit)
("r-doparallel" ,r-doparallel)
("r-ff" ,r-ff)
("r-ffbase" ,r-ffbase)
("r-foreach" ,r-foreach)
("r-genomicfiles" ,r-genomicfiles)
("r-genomicranges" ,r-genomicranges)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/gQTLBase")
(synopsis "Infrastructure for eQTL, mQTL and similar studies")
(description
"The purpose of this package is to simplify the storage and interrogation
of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL,
and more.")
(license license:artistic2.0)))
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))