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gnu: Add r-flowworkspace.
* gnu/packages/bioconductor.scm (r-flowworkspace): New variable.
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@ -5501,6 +5501,54 @@ (define-public r-rprotobuflib
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for other R packages to compile and link against.")
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(license license:bsd-3)))
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(define-public r-flowworkspace
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(package
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(name "r-flowworkspace")
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(version "3.34.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "flowWorkspace" version))
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(sha256
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(base32
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"0hvbkxyylsygra31l1lxyvbsr5hc50lqy1y7gwrfgrfil4a2m762"))))
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(properties `((upstream-name . "flowWorkspace")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-bh" ,r-bh)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-cytolib" ,r-cytolib)
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("r-data-table" ,r-data-table)
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("r-digest" ,r-digest)
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("r-dplyr" ,r-dplyr)
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("r-flowcore" ,r-flowcore)
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("r-flowviz" ,r-flowviz)
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("r-graph" ,r-graph)
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("r-gridextra" ,r-gridextra)
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("r-lattice" ,r-lattice)
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("r-latticeextra" ,r-latticeextra)
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("r-matrixstats" ,r-matrixstats)
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("r-ncdfflow" ,r-ncdfflow)
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("r-rbgl" ,r-rbgl)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-rcpp" ,r-rcpp)
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("r-rcppparallel" ,r-rcppparallel)
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("r-rgraphviz" ,r-rgraphviz)
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("r-rprotobuflib" ,r-rprotobuflib)
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("r-scales" ,r-scales)
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("r-stringr" ,r-stringr)))
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(home-page "https://bioconductor.org/packages/flowWorkspace/")
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(synopsis "Infrastructure for working with cytometry data")
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(description
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"This package is designed to facilitate comparison of automated gating
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methods against manual gating done in flowJo. This package allows you to
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import basic flowJo workspaces into BioConductor and replicate the gating from
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flowJo using the @code{flowCore} functionality. Gating hierarchies, groups of
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samples, compensation, and transformation are performed so that the output
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matches the flowJo analysis.")
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(license license:artistic2.0)))
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(define-public r-flowsom
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(package
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(name "r-flowsom")
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