gnu: Add r-flowworkspace.

* gnu/packages/bioconductor.scm (r-flowworkspace): New variable.
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Ricardo Wurmus 2019-12-15 14:25:11 +01:00
parent f1964519e7
commit 82c1111745
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@ -5501,6 +5501,54 @@ (define-public r-rprotobuflib
for other R packages to compile and link against.")
(license license:bsd-3)))
(define-public r-flowworkspace
(package
(name "r-flowworkspace")
(version "3.34.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "flowWorkspace" version))
(sha256
(base32
"0hvbkxyylsygra31l1lxyvbsr5hc50lqy1y7gwrfgrfil4a2m762"))))
(properties `((upstream-name . "flowWorkspace")))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-cytolib" ,r-cytolib)
("r-data-table" ,r-data-table)
("r-digest" ,r-digest)
("r-dplyr" ,r-dplyr)
("r-flowcore" ,r-flowcore)
("r-flowviz" ,r-flowviz)
("r-graph" ,r-graph)
("r-gridextra" ,r-gridextra)
("r-lattice" ,r-lattice)
("r-latticeextra" ,r-latticeextra)
("r-matrixstats" ,r-matrixstats)
("r-ncdfflow" ,r-ncdfflow)
("r-rbgl" ,r-rbgl)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rcpp" ,r-rcpp)
("r-rcppparallel" ,r-rcppparallel)
("r-rgraphviz" ,r-rgraphviz)
("r-rprotobuflib" ,r-rprotobuflib)
("r-scales" ,r-scales)
("r-stringr" ,r-stringr)))
(home-page "https://bioconductor.org/packages/flowWorkspace/")
(synopsis "Infrastructure for working with cytometry data")
(description
"This package is designed to facilitate comparison of automated gating
methods against manual gating done in flowJo. This package allows you to
import basic flowJo workspaces into BioConductor and replicate the gating from
flowJo using the @code{flowCore} functionality. Gating hierarchies, groups of
samples, compensation, and transformation are performed so that the output
matches the flowJo analysis.")
(license license:artistic2.0)))
(define-public r-flowsom
(package
(name "r-flowsom")