gnu: Add r-harshlight.

* gnu/packages/bioconductor.scm (r-harshlight): New variable.
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Mădălin Ionel Patrașcu 2022-12-05 16:21:53 +01:00 committed by Ricardo Wurmus
parent 85d5ce4901
commit 8363719476
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@ -5854,6 +5854,33 @@ (define-public r-gseabase
Enrichment Analysis} (GSEA).")
(license license:artistic2.0)))
(define-public r-harshlight
(package
(name "r-harshlight")
(version "1.70.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "Harshlight" version))
(sha256
(base32
"0asjgcnwawg8x7ql0srhb2011rvb4kr2cpsa1cy28nfmjfvdf0qm"))))
(properties `((upstream-name . "Harshlight")))
(build-system r-build-system)
(propagated-inputs
(list r-affy
r-altcdfenvs
r-biobase))
(home-page "http://asterion.rockefeller.edu/Harshlight/")
(synopsis "Corrective make-up program for microarray chips")
(description
"The package detects extended diffuse and compact blemishes on microarray
chips. Harshlight marks the areas in a collection of chips (affybatch
objects). A corrected @code{AffyBatch} object will result. The package
replaces the defected areas with @code{N/A}s or the median of the values of
the same probe. The new version handles the substitute value as a whole
matrix to solve the memory problem.")
(license license:gpl2+)))
(define-public r-hpar
(package
(name "r-hpar")