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gnu: Add pyicoteo.
* gnu/packages/bioinformatics.scm (pyicoteo): New variable.
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@ -2556,6 +2556,44 @@ (define-public pbtranscript-tofu
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generated using the PacBio Iso-Seq protocol.")
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(license license:bsd-3))))
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(define-public pyicoteo
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(package
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(name "pyicoteo")
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(version "2.0.7")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://bitbucket.org/regulatorygenomicsupf/"
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"pyicoteo/get/v" version ".tar.bz2"))
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(file-name (string-append name "-" version ".tar.bz2"))
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(sha256
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(base32
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"0d6087f29xp8wxwlj111c3sylli98n0l8ry58c51ixzq0zfm50wa"))))
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(build-system python-build-system)
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(arguments
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`(#:python ,python-2 ; does not work with Python 3
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#:tests? #f)) ; there are no tests
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(inputs
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`(("python2-matplotlib" ,python2-matplotlib)))
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(home-page "https://bitbucket.org/regulatorygenomicsupf/pyicoteo")
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(synopsis "Analyze high-throughput genetic sequencing data")
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(description
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"Pyicoteo is a suite of tools for the analysis of high-throughput genetic
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sequencing data. It works with genomic coordinates. There are currently six
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different command-line tools:
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@enumerate
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@item pyicoregion: for generating exploratory regions automatically;
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@item pyicoenrich: for differential enrichment between two conditions;
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@item pyicoclip: for calling CLIP-Seq peaks without a control;
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@item pyicos: for genomic coordinates manipulation;
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@item pyicoller: for peak calling on punctuated ChIP-Seq;
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@item pyicount: to count how many reads from N experiment files overlap in a
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region file;
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@item pyicotrocol: to combine operations from pyicoteo.
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@end enumerate\n")
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(license license:gpl3+)))
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(define-public prodigal
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(package
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(name "prodigal")
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