gnu: Add pyicoteo.

* gnu/packages/bioinformatics.scm (pyicoteo): New variable.
This commit is contained in:
Ricardo Wurmus 2016-03-11 17:01:00 +01:00
parent 388e05ee16
commit 846e340954

View file

@ -2556,6 +2556,44 @@ (define-public pbtranscript-tofu
generated using the PacBio Iso-Seq protocol.") generated using the PacBio Iso-Seq protocol.")
(license license:bsd-3)))) (license license:bsd-3))))
(define-public pyicoteo
(package
(name "pyicoteo")
(version "2.0.7")
(source
(origin
(method url-fetch)
(uri (string-append "https://bitbucket.org/regulatorygenomicsupf/"
"pyicoteo/get/v" version ".tar.bz2"))
(file-name (string-append name "-" version ".tar.bz2"))
(sha256
(base32
"0d6087f29xp8wxwlj111c3sylli98n0l8ry58c51ixzq0zfm50wa"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2 ; does not work with Python 3
#:tests? #f)) ; there are no tests
(inputs
`(("python2-matplotlib" ,python2-matplotlib)))
(home-page "https://bitbucket.org/regulatorygenomicsupf/pyicoteo")
(synopsis "Analyze high-throughput genetic sequencing data")
(description
"Pyicoteo is a suite of tools for the analysis of high-throughput genetic
sequencing data. It works with genomic coordinates. There are currently six
different command-line tools:
@enumerate
@item pyicoregion: for generating exploratory regions automatically;
@item pyicoenrich: for differential enrichment between two conditions;
@item pyicoclip: for calling CLIP-Seq peaks without a control;
@item pyicos: for genomic coordinates manipulation;
@item pyicoller: for peak calling on punctuated ChIP-Seq;
@item pyicount: to count how many reads from N experiment files overlap in a
region file;
@item pyicotrocol: to combine operations from pyicoteo.
@end enumerate\n")
(license license:gpl3+)))
(define-public prodigal (define-public prodigal
(package (package
(name "prodigal") (name "prodigal")