mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-11-07 15:36:20 -05:00
gnu: Add pyicoteo.
* gnu/packages/bioinformatics.scm (pyicoteo): New variable.
This commit is contained in:
parent
388e05ee16
commit
846e340954
1 changed files with 38 additions and 0 deletions
|
@ -2556,6 +2556,44 @@ (define-public pbtranscript-tofu
|
||||||
generated using the PacBio Iso-Seq protocol.")
|
generated using the PacBio Iso-Seq protocol.")
|
||||||
(license license:bsd-3))))
|
(license license:bsd-3))))
|
||||||
|
|
||||||
|
(define-public pyicoteo
|
||||||
|
(package
|
||||||
|
(name "pyicoteo")
|
||||||
|
(version "2.0.7")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (string-append "https://bitbucket.org/regulatorygenomicsupf/"
|
||||||
|
"pyicoteo/get/v" version ".tar.bz2"))
|
||||||
|
(file-name (string-append name "-" version ".tar.bz2"))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"0d6087f29xp8wxwlj111c3sylli98n0l8ry58c51ixzq0zfm50wa"))))
|
||||||
|
(build-system python-build-system)
|
||||||
|
(arguments
|
||||||
|
`(#:python ,python-2 ; does not work with Python 3
|
||||||
|
#:tests? #f)) ; there are no tests
|
||||||
|
(inputs
|
||||||
|
`(("python2-matplotlib" ,python2-matplotlib)))
|
||||||
|
(home-page "https://bitbucket.org/regulatorygenomicsupf/pyicoteo")
|
||||||
|
(synopsis "Analyze high-throughput genetic sequencing data")
|
||||||
|
(description
|
||||||
|
"Pyicoteo is a suite of tools for the analysis of high-throughput genetic
|
||||||
|
sequencing data. It works with genomic coordinates. There are currently six
|
||||||
|
different command-line tools:
|
||||||
|
|
||||||
|
@enumerate
|
||||||
|
@item pyicoregion: for generating exploratory regions automatically;
|
||||||
|
@item pyicoenrich: for differential enrichment between two conditions;
|
||||||
|
@item pyicoclip: for calling CLIP-Seq peaks without a control;
|
||||||
|
@item pyicos: for genomic coordinates manipulation;
|
||||||
|
@item pyicoller: for peak calling on punctuated ChIP-Seq;
|
||||||
|
@item pyicount: to count how many reads from N experiment files overlap in a
|
||||||
|
region file;
|
||||||
|
@item pyicotrocol: to combine operations from pyicoteo.
|
||||||
|
@end enumerate\n")
|
||||||
|
(license license:gpl3+)))
|
||||||
|
|
||||||
(define-public prodigal
|
(define-public prodigal
|
||||||
(package
|
(package
|
||||||
(name "prodigal")
|
(name "prodigal")
|
||||||
|
|
Loading…
Reference in a new issue