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gnu: Add r-timeseriesexperiment.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
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@ -5505,3 +5505,42 @@ (define-public r-wavcluster
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be applied to the analysis of other NGS data obtained from experimental
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procedures that induce nucleotide substitutions (e.g. BisSeq).")
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(license license:gpl2)))
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(define-public r-timeseriesexperiment
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(package
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(name "r-timeseriesexperiment")
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(version "1.2.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "TimeSeriesExperiment" version))
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(sha256
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(base32
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"1j11g7a2p0yk38fx6wd6152l1xynghj01pfxihalw601jwf1bl0y"))))
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(properties
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`((upstream-name . "TimeSeriesExperiment")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-deseq2" ,r-deseq2)
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("r-dplyr" ,r-dplyr)
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("r-dynamictreecut" ,r-dynamictreecut)
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("r-edger" ,r-edger)
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("r-ggplot2" ,r-ggplot2)
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("r-hmisc" ,r-hmisc)
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("r-limma" ,r-limma)
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("r-magrittr" ,r-magrittr)
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("r-proxy" ,r-proxy)
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("r-s4vectors" ,r-s4vectors)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-tibble" ,r-tibble)
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("r-tidyr" ,r-tidyr)
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("r-vegan" ,r-vegan)
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("r-viridis" ,r-viridis)))
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(home-page "https://github.com/nlhuong/TimeSeriesExperiment/")
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(synopsis "Analysis for short time-series data")
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(description
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"This package is a visualization and analysis toolbox for short time
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course data which includes dimensionality reduction, clustering, two-sample
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differential expression testing and gene ranking techniques. The package also
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provides methods for retrieving enriched pathways.")
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(license license:lgpl3+)))
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