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gnu: scregseg: Update to 0.1.3.

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* gnu/packages/bioinformatics.scm (scregseg): Update to 0.1.3.
[source]: Simplify snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Add phases 'set-numba-cache-dir and 'build-extensions; enable
tests.
This commit is contained in:
Ricardo Wurmus 2023-02-10 19:41:54 +01:00
parent fea66096a2
commit 8a0b625a2d
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1 changed files with 15 additions and 9 deletions
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gnu/packages/bioinformatics.scm
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@ -17787,7 +17787,7 @@ (define-public scvelo
(define-public scregseg
(package
(name "scregseg")
(version "0.1.1")
(version "0.1.3")
(source (origin
(method git-fetch)
(uri (git-reference
@ -17796,16 +17796,22 @@ (define-public scregseg
(file-name (git-file-name name version))
(sha256
(base32
"1k8hllr5if6k2mm2zj391fv40sfc008cjm04l9vgfsdppb80i112"))
"07g2barywa1wi8mggbxkbxqjw1fzd0a0l9cjdbkx4s40imb1dbxb"))
(snippet
#~(begin
(use-modules ((guix build utils)))
(delete-file "src/scregseg/_utils.c")))))
(build-system python-build-system)
'(delete-file "src/scregseg/_utils.c"))))
(build-system pyproject-build-system)
(arguments
`(#:tests? #false ; tests require network access
#:phases
(modify-phases %standard-phases
(list
#:phases
'(modify-phases %standard-phases
;; Numba needs a writable dir to cache functions.
(add-before 'check 'set-numba-cache-dir
(lambda _
(setenv "NUMBA_CACHE_DIR" "/tmp")))
;; Cython extensions have to be built before running the tests.
(add-before 'check 'build-extensions
(lambda _
(invoke "python" "setup.py" "build_ext" "--inplace")))
(add-after 'unpack 'do-not-fail-to-find-sklearn
(lambda _
;; XXX: I have no idea why it cannot seem to find sklearn.