gnu: Remove pepr.

* gnu/packages/bioinformatics.scm (pepr): Delete variable.
This commit is contained in:
Maxim Cournoyer 2022-04-29 13:35:34 -04:00
parent 3d63c5f1ba
commit 8bcb07d089
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@ -8729,32 +8729,6 @@ (define-public piranha
may optionally be provided to further inform the peak-calling process.")
(license license:gpl3+))))
(define-public pepr
(package
(name "pepr")
(version "1.0.9")
(source (origin
(method url-fetch)
(uri (pypi-uri "PePr" version))
(sha256
(base32
"0qxjfdpl1b1y53nccws2d85f6k74zwmx8y8sd9rszcqhfayx6gdx"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2 ; python2 only
#:tests? #f)) ; no tests included
(propagated-inputs
(list python2-numpy python2-scipy python2-pysam))
(home-page "https://github.com/shawnzhangyx/PePr")
(synopsis "Peak-calling and prioritization pipeline for ChIP-Seq data")
(description
"PePr is a ChIP-Seq peak calling or differential binding analysis tool
that is primarily designed for data with biological replicates. It uses a
negative binomial distribution to model the read counts among the samples in
the same group, and look for consistent differences between ChIP and control
group or two ChIP groups run under different conditions.")
(license license:gpl3+)))
(define-public filevercmp
(let ((commit "1a9b779b93d0b244040274794d402106907b71b7")
(revision "1"))