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gnu: Remove pepr.
* gnu/packages/bioinformatics.scm (pepr): Delete variable.
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@ -8729,32 +8729,6 @@ (define-public piranha
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may optionally be provided to further inform the peak-calling process.")
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(license license:gpl3+))))
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(define-public pepr
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(package
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(name "pepr")
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(version "1.0.9")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "PePr" version))
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(sha256
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(base32
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"0qxjfdpl1b1y53nccws2d85f6k74zwmx8y8sd9rszcqhfayx6gdx"))))
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(build-system python-build-system)
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(arguments
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`(#:python ,python-2 ; python2 only
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#:tests? #f)) ; no tests included
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(propagated-inputs
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(list python2-numpy python2-scipy python2-pysam))
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(home-page "https://github.com/shawnzhangyx/PePr")
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(synopsis "Peak-calling and prioritization pipeline for ChIP-Seq data")
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(description
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"PePr is a ChIP-Seq peak calling or differential binding analysis tool
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that is primarily designed for data with biological replicates. It uses a
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negative binomial distribution to model the read counts among the samples in
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the same group, and look for consistent differences between ChIP and control
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group or two ChIP groups run under different conditions.")
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(license license:gpl3+)))
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(define-public filevercmp
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(let ((commit "1a9b779b93d0b244040274794d402106907b71b7")
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(revision "1"))
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