gnu: Add r-iclusterplus.

* gnu/packages/bioconductor.scm (r-iclusterplus): New variable.
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Ricardo Wurmus 2019-05-10 12:44:09 +02:00
parent b40a36baff
commit 8c42f8f6e8
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@ -4339,3 +4339,33 @@ (define-public r-biocfilecache
custom Txdb objects) that are costly or difficult to create, web resources,
and data files used across sessions.")
(license license:artistic2.0)))
(define-public r-iclusterplus
(package
(name "r-iclusterplus")
(version "1.20.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "iClusterPlus" version))
(sha256
(base32
"14x43jjhbp4zwb4dv9rwrm5l5p7h76bc1zkdbiikqip9bzph0viq"))))
(properties `((upstream-name . "iClusterPlus")))
(build-system r-build-system)
(native-inputs `(("gfortran" ,gfortran)))
(home-page "https://bioconductor.org/packages/iClusterPlus/")
(synopsis "Integrative clustering of multi-type genomic data")
(description
"iClusterPlus is developed for integrative clustering analysis of
multi-type genomic data and is an enhanced version of iCluster proposed and
developed by Shen, Olshen and Ladanyi (2009). Multi-type genomic data arise
from the experiments where biological samples (e.g. tumor samples) are
analyzed by multiple techniques, for instance, @dfn{array comparative genomic
hybridization} (aCGH), gene expression microarray, RNA-seq and DNA-seq, and so
on. In the iClusterPlus model, binary observations such as somatic mutation
are modeled as Binomial processes; categorical observations such as copy
number states are realizations of Multinomial random variables; counts are
modeled as Poisson random processes; and continuous measures are modeled by
Gaussian distributions.")
(license license:gpl2+)))