gnu: Add multichoose.

* gnu/packages/bioinformatics.scm (multichoose): New variable.
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Pierre Neidhardt 2019-05-18 19:26:36 +02:00 committed by Efraim Flashner
parent 7faa70cf2b
commit 8cd51276e5
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@ -14898,3 +14898,37 @@ (define-public smithwaterman
(description "Implementation of the Smith-Waterman algorithm.")
;; The licensing terms are unclear: https://github.com/ekg/smithwaterman/issues/9.
(license (list license:gpl2 license:expat)))))
(define-public multichoose
(package
(name "multichoose")
(version "1.0.3")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/ekg/multichoose/")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0ci5fqvmpamwgxvmyd79ygj6n3bnbl3vc7b6h1sxz58186sm3pfs"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; Tests require node.
#:phases
(modify-phases %standard-phases
(delete 'configure) ; There is no configure phase.
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
;; TODO: There are Python modules for these programs too.
(install-file "multichoose" bin)
(install-file "multipermute" bin))
#t)))))
(home-page "https://github.com/ekg/multichoose")
(synopsis "Efficient loopless multiset combination generation algorithm")
(description "This library implements an efficient loopless multiset
combination generation algorithm which is (approximately) described in
\"Loopless algorithms for generating permutations, combinations, and other
combinatorial configurations.\", G. Ehrlich - Journal of the ACM (JACM),
1973. (Algorithm 7.)")
(license license:expat)))