ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-11-18 12:47:33 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor).

Browse source 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): ...to here.
[source]: Use 'bioconductor-uri'.
This commit is contained in:
zimoun 2021-03-15 14:01:32 +01:00 committed by Ricardo Wurmus
parent 9949f459bf
commit 8d6d75ff39
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
2 changed files with 20 additions and 23 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

20
gnu/packages/bioconductor.scm
View file

@ -3,6 +3,7 @@
;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
@ -391,6 +392,25 @@ (define-public r-bsgenome-mmusculus-ucsc-mm10
in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-genomeinfodbdata
(package
(name "r-genomeinfodbdata")
(version "1.2.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomeInfoDbData" version 'annotation))
(sha256
(base32
"0di6nlqpsyqf693k2na65ayqldih563x3zfrczpqc5q2hl5kg35c"))))
(properties
`((upstream-name . "GenomeInfoDbData")))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/GenomeInfoDbData")
(synopsis "Species and taxonomy ID look up tables for GenomeInfoDb")
(description "This package contains data for mapping between NCBI taxonomy
ID and species. It is used by functions in the GenomeInfoDb package.")
(license license:artistic2.0)))
(define-public r-homo-sapiens
(package
(name "r-homo-sapiens")

23
gnu/packages/bioinformatics.scm
View file

@ -7691,29 +7691,6 @@ (define-public bio-vcf
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-genomeinfodbdata
(package
(name "r-genomeinfodbdata")
(version "1.2.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://bioconductor.org/packages/release/"
"data/annotation/src/contrib/GenomeInfoDbData_"
version ".tar.gz"))
(sha256
(base32
"0di6nlqpsyqf693k2na65ayqldih563x3zfrczpqc5q2hl5kg35c"))))
(properties
`((upstream-name . "GenomeInfoDbData")))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/GenomeInfoDbData")
(synopsis "Species and taxonomy ID look up tables for GenomeInfoDb")
(description "This package contains data for mapping between NCBI taxonomy
ID and species. It is used by functions in the GenomeInfoDb package.")
(license license:artistic2.0)))
(define-public r-genomeinfodb
(package
(name "r-genomeinfodb")