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gnu: Add r-genomicfiles.

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* gnu/packages/bioinformatics.scm (r-genomicfiles): New variable.
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Ricardo Wurmus 2017-11-07 15:25:55 +01:00
parent cd215877a0
commit 902fb15d92
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33
gnu/packages/bioinformatics.scm
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@ -9483,6 +9483,39 @@ (define-public r-gage
analysis using other methods.")
(license license:gpl2+)))
(define-public r-genomicfiles
(package
(name "r-genomicfiles")
(version "1.14.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "GenomicFiles" version))
(sha256
(base32
"0r0wmrs5jycf1kckhnc2sgjmp336srlcjdkpbb1ymm7kazdd0s9n"))))
(properties `((upstream-name . "GenomicFiles")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/GenomicFiles")
(synopsis "Distributed computing by file or by range")
(description
"This package provides infrastructure for parallel computations
distributed by file or by range. User defined mapper and reducer functions
provide added flexibility for data combination and manipulation.")
(license license:artistic2.0)))
(define-public r-qvalue
(package
(name "r-qvalue")