gnu: Add bustools.

* gnu/packages/bioinformatics.scm (bustools): New variable.

Change-Id: I24a936ad1d630663a41855a833e35fb9caa0155c
This commit is contained in:
Ricardo Wurmus 2024-01-05 18:21:06 +01:00
parent 657fd534fb
commit 9068dc9f29
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@ -575,6 +575,30 @@ (define-public bitmapperbs
whole-genome bisulfite sequencing (WGBS) reads from directional protocol.")
(license license:asl2.0)))
(define-public bustools
(package
(name "bustools")
(version "0.43.2")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/BUStools/bustools")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"068kjlc4d528269nl5mc3j8h2c95r1v545d3fi1iw1ckg8rba0hg"))))
(build-system cmake-build-system)
(arguments (list #:tests? #f)) ;no test target
(inputs (list zlib))
(home-page "https://bustools.github.io")
(synopsis "Tools for working with BUS files")
(description "bustools is a program for manipulating BUS files for single
cell RNA-Seq datasets. It can be used to error correct barcodes, collapse
UMIs, produce gene count or transcript compatibility count matrices, and is useful
for many other tasks.")
(license license:bsd-2)))
(define-public cellsnp-lite
;; Last release is from November 2021 and does not contain fixes.
(let ((commit "0885d746b0b1ea65c8ef92f8943ca7669ca9734a")