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gnu: r-topgo: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-topgo): Move from here...
* gnu/packages/bioconductor.scm (r-topgo): ...to here.
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zimoun 2021-05-21 22:25:36 +02:00 committed by Ricardo Wurmus
parent f78ff75b41
commit 90bbab5cff
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2 changed files with 33 additions and 33 deletions
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33
gnu/packages/bioconductor.scm
View file

@ -2873,6 +2873,39 @@ (define-public r-systempiper
annotation infrastructure.")
(license license:artistic2.0)))
(define-public r-topgo
(package
(name "r-topgo")
(version "2.42.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "topGO" version))
(sha256
(base32
"0vr3l9gvd3dhy446k3fkj6rm7z1abxi56rbnrs64297yzxaz1ngl"))))
(properties
`((upstream-name . "topGO")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-dbi" ,r-dbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-go-db" ,r-go-db)
("r-graph" ,r-graph)
("r-lattice" ,r-lattice)
("r-matrixstats" ,r-matrixstats)
("r-sparsem" ,r-sparsem)))
(home-page "https://bioconductor.org/packages/topGO")
(synopsis "Enrichment analysis for gene ontology")
(description
"The topGO package provides tools for testing @dfn{gene ontology} (GO)
terms while accounting for the topology of the GO graph. Different test
statistics and different methods for eliminating local similarities and
dependencies between GO terms can be implemented and applied.")
;; Any version of the LGPL applies.
(license license:lgpl2.1+)))
(define-public r-variantannotation
(package
(name "r-variantannotation")

33
gnu/packages/bioinformatics.scm
View file

@ -7976,39 +7976,6 @@ (define-public r-go-db
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
(define-public r-topgo
(package
(name "r-topgo")
(version "2.42.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "topGO" version))
(sha256
(base32
"0vr3l9gvd3dhy446k3fkj6rm7z1abxi56rbnrs64297yzxaz1ngl"))))
(properties
`((upstream-name . "topGO")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-dbi" ,r-dbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-go-db" ,r-go-db)
("r-graph" ,r-graph)
("r-lattice" ,r-lattice)
("r-matrixstats" ,r-matrixstats)
("r-sparsem" ,r-sparsem)))
(home-page "https://bioconductor.org/packages/topGO")
(synopsis "Enrichment analysis for gene ontology")
(description
"The topGO package provides tools for testing @dfn{gene ontology} (GO)
terms while accounting for the topology of the GO graph. Different test
statistics and different methods for eliminating local similarities and
dependencies between GO terms can be implemented and applied.")
;; Any version of the LGPL applies.
(license license:lgpl2.1+)))
(define-public r-bsgenome
(package
(name "r-bsgenome")