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gnu: r-biostrings: Update to 2.64.0.

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* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.0.
[arguments]: Remove build phase 'patch-for-R-4.2.0.
This commit is contained in:
Ricardo Wurmus 2022-05-28 12:23:09 +02:00
parent 413133e430
commit 90d165ea86
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GPG key ID: 197A5888235FACAC
1 changed files with 2 additions and 15 deletions
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17
gnu/packages/bioconductor.scm
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@ -3135,29 +3135,16 @@ (define-public r-biocparallel
(define-public r-biostrings
(package
(name "r-biostrings")
(version "2.62.0")
(version "2.64.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "Biostrings" version))
(sha256
(base32
"11qkw863mkfz3mc55v2gmfr4w3xziqfb5pq3hmjqpn8vpw8ax3xq"))))
"1sz52hz89l9w2y2bvyis7kczslk1xnskls9l2bn1s3dhnjzdzhg8"))))
(properties
`((upstream-name . "Biostrings")))
(build-system r-build-system)
(arguments
'(#:phases
(modify-phases %standard-phases
;; See commit c3340745870a88d1558e093a7f892c1aeac784ef in
;; https://github.com/Bioconductor/Biostrings/
(add-after 'unpack 'patch-for-R-4.2.0
(lambda _
(substitute* '("src/BitMatrix.c"
"src/RoSeqs_utils.c"
"src/match_pdict_utils.c"
"src/xscat.c")
(("#include <S.h>.*")
"#define Salloc(n,t) (t*)S_alloc(n, sizeof(t)) /* from old <S.h> */\n")))))))
(propagated-inputs
(list r-biocgenerics
r-crayon