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gnu: r-iranges: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-iranges): Move from here... * gnu/packages/bioconductor.scm (r-iranges): ...to here.
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@ -2,6 +2,7 @@
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;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
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;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
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;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
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@ -1244,6 +1245,35 @@ (define-public r-ideoviz
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arbitrary genomic intervals along chromosomal ideogram.")
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arbitrary genomic intervals along chromosomal ideogram.")
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(license license:gpl2)))
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(license license:gpl2)))
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(define-public r-iranges
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(package
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(name "r-iranges")
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(version "2.24.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "IRanges" version))
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(sha256
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(base32
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"01mx46a82vd3gz705pj0kk4wpxg683s8jqxchzjia3gz00b4qw52"))))
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(properties
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`((upstream-name . "IRanges")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://bioconductor.org/packages/IRanges")
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(synopsis "Infrastructure for manipulating intervals on sequences")
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(description
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"This package provides efficient low-level and highly reusable S4 classes
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for storing ranges of integers, RLE vectors (Run-Length Encoding), and, more
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generally, data that can be organized sequentially (formally defined as
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@code{Vector} objects), as well as views on these @code{Vector} objects.
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Efficient list-like classes are also provided for storing big collections of
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instances of the basic classes. All classes in the package use consistent
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naming and share the same rich and consistent \"Vector API\" as much as
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possible.")
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(license license:artistic2.0)))
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;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
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;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
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;; from Bioconductor.
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;; from Bioconductor.
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(define-public r-deconstructsigs
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(define-public r-deconstructsigs
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@ -7691,35 +7691,6 @@ (define-public bio-vcf
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(home-page "https://github.com/vcflib/bio-vcf")
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(home-page "https://github.com/vcflib/bio-vcf")
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(license license:expat)))
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(license license:expat)))
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(define-public r-iranges
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(package
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(name "r-iranges")
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(version "2.24.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "IRanges" version))
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(sha256
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(base32
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"01mx46a82vd3gz705pj0kk4wpxg683s8jqxchzjia3gz00b4qw52"))))
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(properties
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`((upstream-name . "IRanges")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://bioconductor.org/packages/IRanges")
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(synopsis "Infrastructure for manipulating intervals on sequences")
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(description
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"This package provides efficient low-level and highly reusable S4 classes
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for storing ranges of integers, RLE vectors (Run-Length Encoding), and, more
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generally, data that can be organized sequentially (formally defined as
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@code{Vector} objects), as well as views on these @code{Vector} objects.
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Efficient list-like classes are also provided for storing big collections of
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instances of the basic classes. All classes in the package use consistent
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naming and share the same rich and consistent \"Vector API\" as much as
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possible.")
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(license license:artistic2.0)))
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(define-public r-genomeinfodbdata
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(define-public r-genomeinfodbdata
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(package
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(package
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(name "r-genomeinfodbdata")
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(name "r-genomeinfodbdata")
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