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gnu: Add r-motifmatchr.

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* gnu/packages/bioconductor.scm (r-motifmatchr): New variable.
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Ricardo Wurmus 2021-02-18 15:40:44 +01:00
parent 2def2e203f
commit 9a38f39ec0
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1 changed files with 34 additions and 0 deletions
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34
gnu/packages/bioconductor.scm
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@ -8972,6 +8972,40 @@ (define-public r-tfbstools
provides a wrapper of de novo motif discovery software.") provides a wrapper of de novo motif discovery software.")
(license license:gpl2))) (license license:gpl2)))
(define-public r-motifmatchr
(package
(name "r-motifmatchr")
(version "1.12.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "motifmatchr" version))
(sha256
(base32
"0zrpn0hqdg0hm80ydkfpiqncwyb8y0xp6mlin7g955p8zcpcm67z"))))
(properties `((upstream-name . "motifmatchr")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-tfbstools" ,r-tfbstools)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/motifmatchr")
(synopsis "Fast motif matching in R")
(description
"Quickly find motif matches for many motifs and many sequences.
This package wraps C++ code from the MOODS motif calling library.")
(license license:gpl3)))
(define-public r-singlecellexperiment (define-public r-singlecellexperiment
(package (package
(name "r-singlecellexperiment") (name "r-singlecellexperiment")