From 9bb428ad681bd2f779dd52db41d0f4112efab912 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 2 May 2023 10:14:04 +0200 Subject: [PATCH] gnu: Add r-microbiomestat. * gnu/packages/bioconductor.scm (r-microbiomestat): New variable. --- gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 31bd4e24b0..75605945ae 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -12174,6 +12174,40 @@ (define-public r-microbiome standardization of the analyses and the development of best practices.") (license license:bsd-2))) +;; This is a CRAN package but it depends on phyloseq, which is from +;; Bioconductor. +(define-public r-microbiomestat + (package + (name "r-microbiomestat") + (version "1.1") + (source (origin + (method url-fetch) + (uri (cran-uri "MicrobiomeStat" version)) + (sha256 + (base32 + "1j5sar85a1gksc83pc4ypxwb0c7whxglx069zarphrgqfazcr1m4")))) + (properties `((upstream-name . "MicrobiomeStat"))) + (build-system r-build-system) + (propagated-inputs (list r-foreach + r-ggplot2 + r-ggrepel + r-lmertest + r-mass + r-matrix + r-matrixstats + r-modeest + r-phyloseq + r-statmod)) + (home-page "https://cran.r-project.org/package=MicrobiomeStat") + (synopsis "Statistical methods for microbiome compositional data") + (description + "This package provides a suite of methods for powerful and robust +microbiome data analysis addressing zero-inflation, phylogenetic structure and +compositional effects. The methods can be applied to the analysis of +other (high-dimensional) compositional data arising from sequencing +experiments.") + (license license:gpl3))) + (define-public r-milor (package (name "r-milor")