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gnu: ncbi-vdb: Update to 2.5.4.

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* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.4.
This commit is contained in:
Ricardo Wurmus 2015-11-20 15:15:42 +01:00
parent 614a8977cb
commit 9e5ef614aa
1 changed files with 2 additions and 16 deletions
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18
gnu/packages/bioinformatics.scm
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@ -2399,7 +2399,7 @@ (define-public ngs-java
(define-public ncbi-vdb
(package
(name "ncbi-vdb")
(version "2.4.5-5")
(version "2.5.4")
(source
(origin
(method url-fetch)
@ -2409,7 +2409,7 @@ (define-public ncbi-vdb
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1cj8nk6if8sqagv20vx36v566fdvhcaadf0x1ycnbgql6chbs6vy"))))
"1rcnyc4xkdfcjww2i0s0qrbapys0cxbjcx2sy3qkpslf9f400fgj"))))
(build-system gnu-build-system)
(arguments
`(#:parallel-build? #f ; not supported
@ -2419,20 +2419,6 @@ (define-public ncbi-vdb
'configure
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
;; Only replace the version suffix, not the version number in the
;; directory name; fixed in commit 4dbba5c6a809 (no release yet).
(substitute* "setup/konfigure.perl"
(((string-append "\\$\\(subst "
"(\\$\\(VERSION[^\\)]*\\)),"
"(\\$\\([^\\)]+\\)),"
"(\\$\\([^\\)]+\\)|\\$\\@)"
"\\)")
_ pattern replacement target)
(string-append "$(patsubst "
"%" pattern ","
"%" replacement ","
target ")")))
;; Override include path for libmagic
(substitute* "setup/package.prl"
(("name => 'magic', Include => '/usr/include'")