diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e340f0174e..035950691d 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -43,6 +43,7 @@ (define-module (gnu packages statistics) #:use-module (guix git-download) #:use-module (guix utils) #:use-module (guix build-system ant) + #:use-module (guix build-system cmake) #:use-module (guix build-system emacs) #:use-module (guix build-system gnu) #:use-module (guix build-system r) @@ -54,12 +55,15 @@ (define-module (gnu packages statistics) #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) #:use-module (gnu packages bash) + #:use-module (gnu packages bison) + #:use-module (gnu packages boost) #:use-module (gnu packages check) #:use-module (gnu packages compression) #:use-module (gnu packages cran) #:use-module (gnu packages curl) #:use-module (gnu packages emacs) #:use-module (gnu packages emacs-xyz) + #:use-module (gnu packages flex) #:use-module (gnu packages fontutils) #:use-module (gnu packages gcc) #:use-module (gnu packages gtk) @@ -90,6 +94,7 @@ (define-module (gnu packages statistics) #:use-module (gnu packages sphinx) #:use-module (gnu packages ssh) #:use-module (gnu packages swig) + #:use-module (gnu packages tbb) #:use-module (gnu packages tcl) #:use-module (gnu packages tex) #:use-module (gnu packages texinfo) @@ -2345,6 +2350,94 @@ (define-public python-statsmodels inference for statistical models.") (license license:bsd-3))) +(define-public python-openturns + (package + (name "python-openturns") + (version "1.21") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/openturns/openturns") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "05lbx8npvvk7jyakvfpgi9ggdp6cnzwv2hjmjrkji2s42axv0q6d")))) + (build-system cmake-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (delete 'check) + ;; This is a Python package which is fully managed by CMake. In + ;; cmake-build-system the check phase runs before install, but the + ;; Python modules required for testing are only installed in the + ;; install phase. Move check to after the install phase. + (add-after 'install 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "ctest" "--exclude-regex" + ;; XXX: Cpp tests fail in 'No such file or directory', + ;; skip for now and only run the Python tests. + ;; TODO: To pass the Python tests below, Ipopt must be + ;; built with MUMPS support, but simply adding mumps + ;; to the inputs doesn't work for it to be found, + ;; possibly because MUMPS doesn't generate a .pc file. + (string-join + (list "^cpp" + "pyinstallcheck_Bonmin_std" + "pyinstallcheck_Bonmin_4dsoo" + "pyinstallcheck_Bonmin_MIT15" + "pyinstallcheck_Bonmin_swiler2014" + "pyinstallcheck_Ipopt_std" + "pyinstallcheck_example_plot_optimization_bonmin" + "pyinstallcheck_coupling_tools") + "|")))))))) + (native-inputs + (list bison + dvisvgm + flex + python-numpydoc + python-sphinx + ;; python-sphinx-gallery ;; Currently broken + swig)) + (inputs + (list openblas ; the only required dependency + ;; The dependecies below are all optional. + bonmin + boost + cbc ;; Maybe this should be propagated by Bonmin? + ceres + cminpack + dlib + hdf5 + hmat + ipopt + libxml2 + mpc + mpfr + nlopt + pagmo + primesieve + python-wrapper + spectra + tbb)) + (propagated-inputs + (list python-chaospy + python-dill + python-matplotlib + python-numpy + python-pandas + python-scipy)) + (home-page "https://openturns.github.io/www/") + (synopsis "Uncertainty treatment library") + (description + "OpenTURNS is a scientific C++ and Python library including an internal +data model and algorithms dedicated to the treatment of uncertainties. The +main goal of this library is giving to specific applications all the +functionalities needed to treat uncertainties in studies.") + (license license:lgpl3+))) + (define-public r-coda (package (name "r-coda")