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gnu: ensembl-vep: Update to 112.

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* gnu/packages/bioinformatics.scm (ensembl-vep): Update to 112.
[propagated-inputs]: Add perl-list-moreutils.
[native-inputs]: Add perl-test-deep and perl-test-warnings.

Change-Id: I8c7de9f3dbc8c6fe4d1383f9dc215aeba018af0d
This commit is contained in:
Ricardo Wurmus 2024-05-22 16:30:26 +02:00
parent d658f8c9af
commit 9f9127e80a
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GPG key ID: 197A5888235FACAC
1 changed files with 11 additions and 8 deletions
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19
gnu/packages/bioinformatics.scm
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@ -21425,7 +21425,7 @@ (define-public perl-cworld-dekker
(license license:asl2.0)))
(define-public ensembl-vep
(let* ((api-version "103")
(let* ((api-version "112")
(api-module
(lambda (name hash)
(origin (method git-fetch)
@ -21437,7 +21437,7 @@ (define-public ensembl-vep
(sha256 (base32 hash))))))
(package
(name "ensembl-vep")
(version (string-append api-version ".1"))
(version api-version)
(source
(origin
(method git-fetch)
@ -21447,7 +21447,7 @@ (define-public ensembl-vep
(file-name (git-file-name name version))
(sha256
(base32
"1iq7p72cv9b38jz2v8a4slzy2n8y0md487943180ym9xc8qvw09c"))))
"0nznmiln2q6bzd3xp8d5cw56higa5w3g9rmg66956bkfky53chvw"))))
(build-system gnu-build-system)
(arguments
`(#:modules ((guix build gnu-build-system)
@ -21538,6 +21538,7 @@ (define-public ensembl-vep
perl-dbi
perl-dbd-mysql
perl-libwww
perl-list-moreutils
perl-http-tiny
perl-json
which))
@ -21548,18 +21549,20 @@ (define-public ensembl-vep
("perl" ,perl)
("api-module-ensembl"
,(api-module "ensembl"
"0s59rj905g72hljzfpvnx5nxwz925b917y4jp912i23f5gwxh14v"))
"10r576iqrz1p61mqbbfs87w4w3nldi45p51z52mq76f3n00l010h"))
("api-module-ensembl-variation"
,(api-module "ensembl-variation"
"1dvwdzzfjhzymq02b6n4p6j3a9q4jgq0g89hs7hj1apd7zhirgkq"))
"0ad03xnyyqpya1bkg6igq9abqxdmi58j89wn2kb3m4bvy1zs03mf"))
("api-module-ensembl-funcgen"
,(api-module "ensembl-funcgen"
"1x23pv38dmv0w0gby6rv3wds50qghb4v3v1mf43vk55msfxzry8n"))
"1m3dxnr6k9x5hmcsxckpxlqx7vbc82lk74r84vcjijgxjkfa5rpp"))
("api-module-ensembl-io"
,(api-module "ensembl-io"
"14adb2x934lzsq20035mazdkhrkcw0qzb0xhz6zps9vk4wixwaix"))
"1xr6kdqqzmbi3m4bls589d1dfjvbs13dxlbf1y172xjyipvmag43"))
("perl-test-deep" ,perl-test-deep)
("perl-test-exception" ,perl-test-exception)
("perl-test-harness" ,perl-test-harness)
("perl-test-exception" ,perl-test-exception)))
("perl-test-warnings" ,perl-test-warnings)))
(home-page "http://www.ensembl.org/vep")
(synopsis "Predict functional effects of genomic variants")
(description