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gnu: python-anndata: Update to 0.7.1.

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* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.1.
[arguments]: Move check phase after install phase; delete one test.
[propagated-inputs]: Add python-importlib-metadata, python-numcodecs,
python-packaging, and python-zarr.
[native-inputs]: Add python-joblib, python-pytest, and python-setuptools-scm.
This commit is contained in:
Ricardo Wurmus 2020-03-05 21:46:12 +01:00
parent 7032c1cc60
commit a098b34980
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1 changed files with 24 additions and 3 deletions
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gnu/packages/python-xyz.scm
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@ -15819,20 +15819,41 @@ (define-public python-zarr
(define-public python-anndata (define-public python-anndata
(package (package
(name "python-anndata") (name "python-anndata")
(version "0.6.18") (version "0.7.1")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "anndata" version)) (uri (pypi-uri "anndata" version))
(sha256 (sha256
(base32 (base32
"03x83yjaccbqszj7x4fwwmpil0ai59yx64d1zmf2691za3j03w73")))) "0rnfbpr55j1a1bi2kd4mz444741hrn74kz90h5rnjr59jmpfnh09"))))
(build-system python-build-system) (build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'delete-inconvenient-tests
(lambda _
;; This test depends on python-scikit-learn.
(delete-file "anndata/tests/test_inplace_subset.py")
#t))
(delete 'check)
(add-after 'install 'check
(lambda* (#:key inputs outputs #:allow-other-keys)
(add-installed-pythonpath inputs outputs)
(invoke "pytest" "-vv"))))))
(propagated-inputs (propagated-inputs
`(("python-h5py" ,python-h5py) `(("python-h5py" ,python-h5py)
("python-importlib-metadata" ,python-importlib-metadata)
("python-natsort" ,python-natsort) ("python-natsort" ,python-natsort)
("python-numcodecs" ,python-numcodecs)
("python-packaging" ,python-packaging)
("python-pandas" ,python-pandas) ("python-pandas" ,python-pandas)
("python-scipy" ,python-scipy))) ("python-scipy" ,python-scipy)
("python-zarr" ,python-zarr)))
(native-inputs
`(("python-joblib" ,python-joblib)
("python-pytest" ,python-pytest)
("python-setuptools-scm" ,python-setuptools-scm)))
(home-page "https://github.com/theislab/anndata") (home-page "https://github.com/theislab/anndata")
(synopsis "Annotated data for data analysis pipelines") (synopsis "Annotated data for data analysis pipelines")
(description "Anndata is a package for simple (functional) high-level APIs (description "Anndata is a package for simple (functional) high-level APIs