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gnu: Add fastp.
* gnu/packages/bioinformatics.scm (fastp): New variable.
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@ -3450,6 +3450,42 @@ (define-public fastqc
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@end itemize\n")
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(license license:gpl3+)))
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(define-public fastp
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(package
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(name "fastp")
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(version "0.14.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/OpenGene/fastp.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1r6ms5zbf5rps4rgp4z73nczadl00b5rqylw8f684isfz27dp0xh"))))
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(build-system gnu-build-system)
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(arguments
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`(#:tests? #f ; there are none
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#:make-flags
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(list (string-append "BINDIR=" (assoc-ref %outputs "out") "/bin"))
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#:phases
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(modify-phases %standard-phases
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(delete 'configure)
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(add-before 'install 'create-target-dir
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(lambda* (#:key outputs #:allow-other-keys)
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(mkdir-p (string-append (assoc-ref outputs "out") "/bin"))
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#t)))))
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(inputs
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`(("zlib" ,zlib)))
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(home-page "https://github.com/OpenGene/fastp/")
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(synopsis "All-in-one FastQ preprocessor")
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(description
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"Fastp is a tool designed to provide fast all-in-one preprocessing for
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FastQ files. This tool has multi-threading support to afford high
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performance.")
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(license license:expat)))
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(define-public htslib
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(package
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(name "htslib")
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