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gnu: Add r-deconstructsigs.

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* gnu/packages/bioconductor.scm (r-deconstructsigs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
Roel Janssen 2020-01-20 20:21:09 +01:00 committed by Ricardo Wurmus
parent 4fc4e5fdd9
commit a38bf7c843
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1 changed files with 28 additions and 0 deletions
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gnu/packages/bioconductor.scm
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@ -694,6 +694,34 @@ (define-public r-illuminahumanmethylationepicmanifest
"This is a manifest package for Illumina's EPIC methylation arrays.")
(license license:artistic2.0)))
;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
;; from Bioconductor.
(define-public r-deconstructsigs
(package
(name "r-deconstructsigs")
(version "1.8.0")
(source (origin
(method url-fetch)
(uri (cran-uri "deconstructSigs" version))
(sha256
(base32
"014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"))))
(properties
`((upstream-name . "deconstructSigs")))
(build-system r-build-system)
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-genomeinfodb" ,r-genomeinfodb)
("r-reshape2" ,r-reshape2)))
(home-page "https://github.com/raerose01/deconstructSigs")
(synopsis "Identifies signatures present in a tumor sample")
(description "This package takes sample information in the form of the
fraction of mutations in each of 96 trinucleotide contexts and identifies
the weighted combination of published signatures that, when summed, most
closely reconstructs the mutational profile.")
(license license:gpl2+)))
(define-public r-do-db
(package
(name "r-do-db")