ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2025-01-12 06:06:53 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: Add r-bsgenome-mmusculus-ucsc-mm9.

Browse source 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9): New
  variable.
This commit is contained in:
Ricardo Wurmus 2016-03-30 12:23:51 +02:00
parent ae2462f7dd
commit a3e9028770
1 changed files with 31 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

31
gnu/packages/bioinformatics.scm
View file

@ -4800,6 +4800,37 @@ (define-public r-bsgenome-hsapiens-ucsc-hg19
by UCSC (hg19, February 2009) and stored in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-mmusculus-ucsc-mm9
(package
(name "r-bsgenome-mmusculus-ucsc-mm9")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "http://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Mmusculus.UCSC.mm9_"
version ".tar.gz"))
(sha256
(base32
"1birqw30g2azimxpnjfzmkphan7x131yy8b9h85lfz5fjdg7841i"))))
(properties
`((upstream-name . "BSgenome.Mmusculus.UCSC.mm9")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"http://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9/")
(synopsis "Full genome sequences for Mouse")
(description
"This package provides full genome sequences for Mus musculus (Mouse) as
provided by UCSC (mm9, July 2007) and stored in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-motifrg
(package
(name "r-motifrg")