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gnu: python-graphtools: Fix tests.

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* gnu/packages/graph.scm (python-graphtools)[arguments]: Add 'patch-tests
phase.

Change-Id: I5ffb4321ddd7e33e812bcb1cf67cee069b07b5f8
This commit is contained in:
Ricardo Wurmus 2024-05-05 12:02:03 +02:00
parent 1b44a23503
commit a4ad0a46ef
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1 changed files with 9 additions and 0 deletions
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9
gnu/packages/graph.scm
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@ -447,6 +447,15 @@ (define-public python-graphtools
(list (list
#:phases #:phases
'(modify-phases %standard-phases '(modify-phases %standard-phases
(add-after 'unpack 'patch-tests
(lambda _
;; The warning message has changed in numpy.
(substitute* "test/test_data.py"
(("\"A sparse matrix was passed, but.*array.\",")
"\"Sparse data was passed, but dense data is required. Use '.toarray()' to convert to a dense numpy array.\",")
;; anndata prints a warning that causes the test to fail.
(("import warnings" m)
(string-append m "\nwarnings.filterwarnings(\"ignore\")")))))
(replace 'check (replace 'check
(lambda* (#:key tests? #:allow-other-keys) (lambda* (#:key tests? #:allow-other-keys)
(when tests? (when tests?