gnu: Add r-flowsorted-blood-epic.

* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): New variable.
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Ricardo Wurmus 2023-03-30 14:34:05 +02:00
parent 0024e4e6d4
commit a5997202b8
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@ -1521,6 +1521,40 @@ (define-public r-flowsorted-blood-450k
associated with cell type.") associated with cell type.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-flowsorted-blood-epic
(package
(name "r-flowsorted-blood-epic")
(version "2.2.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "FlowSorted.Blood.EPIC" version
'experiment))
(sha256
(base32
"1vybj69jxnirqg6ik03q3pb1vv23z8mir7wpi2ys7iljf5ixzgl1"))))
(properties `((upstream-name . "FlowSorted.Blood.EPIC")))
(build-system r-build-system)
(propagated-inputs
(list r-annotationhub
r-experimenthub
r-genefilter
r-minfi
r-nlme
r-quadprog
r-s4vectors
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/immunomethylomics/FlowSorted.Blood.EPIC")
(synopsis
"Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells")
(description
"This package provides raw data objects to be used for blood cell
proportion estimation in minfi and similar packages. The
@code{FlowSorted.Blood.EPIC} object is based in samples assayed by Brock
Christensen and colleagues; for details see Salas et al. 2018.
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110554.")
(license license:gpl3)))
(define-public r-genelendatabase (define-public r-genelendatabase
(package (package
(name "r-genelendatabase") (name "r-genelendatabase")