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gnu: Add r-flowsorted-blood-epic.
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): New variable.
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@ -1521,6 +1521,40 @@ (define-public r-flowsorted-blood-450k
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associated with cell type.")
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(license license:artistic2.0)))
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(define-public r-flowsorted-blood-epic
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(package
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(name "r-flowsorted-blood-epic")
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(version "2.2.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "FlowSorted.Blood.EPIC" version
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'experiment))
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(sha256
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(base32
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"1vybj69jxnirqg6ik03q3pb1vv23z8mir7wpi2ys7iljf5ixzgl1"))))
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(properties `((upstream-name . "FlowSorted.Blood.EPIC")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-annotationhub
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r-experimenthub
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r-genefilter
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r-minfi
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r-nlme
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r-quadprog
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r-s4vectors
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r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/immunomethylomics/FlowSorted.Blood.EPIC")
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(synopsis
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"Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells")
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(description
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"This package provides raw data objects to be used for blood cell
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proportion estimation in minfi and similar packages. The
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@code{FlowSorted.Blood.EPIC} object is based in samples assayed by Brock
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Christensen and colleagues; for details see Salas et al. 2018.
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110554.")
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(license license:gpl3)))
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(define-public r-genelendatabase
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(package
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(name "r-genelendatabase")
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