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gnu: Add r-jetset.

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* gnu/packages/bioconductor.scm (r-jetset): New variable.
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zimoun 2022-01-18 18:54:11 +01:00 committed by Ricardo Wurmus
parent 40042cca73
commit a81e20b18a
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1 changed files with 27 additions and 0 deletions
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27
gnu/packages/bioconductor.scm
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@ -1963,6 +1963,33 @@ (define-public r-deconstructsigs
closely reconstructs the mutational profile.")
(license license:gpl2+)))
;; This is a CRAN package, but it depends on Bioconductor packages.
(define-public r-jetset
(package
(name "r-jetset")
(version "3.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "jetset" version))
(sha256
(base32 "0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"))))
(properties `((upstream-name . "jetset")))
(build-system r-build-system)
(propagated-inputs (list r-annotationdbi r-org-hs-eg-db))
(home-page "http://www.cbs.dtu.dk/biotools/jetset/")
(synopsis "One-to-one gene-probeset mapping for Affymetrix human microarrays")
(description
"This package provides a one-to-one mapping from gene to \"best\" probe
set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a,
hgu133plus2, and u133x3p. On Affymetrix gene expression microarrays, a single
gene may be measured by multiple probe sets. This can present a mild
conundrum when attempting to evaluate a gene \"signature\" that is defined by
gene names rather than by specific probe sets. This package also includes the
pre-calculated probe set quality scores that were used to define the
mapping.")
(license license:artistic2.0)))
;; This is a CRAN package, but it depends on Bioconductor packages.
(define-public r-nmf
(package