mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-12-26 06:18:07 -05:00
gnu: Add imp.
* gnu/packages/bioinformatics.scm (imp): New variable.
This commit is contained in:
parent
282b01515b
commit
aa163424b2
1 changed files with 48 additions and 0 deletions
|
@ -85,6 +85,7 @@ (define-module (gnu packages bioinformatics)
|
|||
#:use-module (gnu packages ruby)
|
||||
#:use-module (gnu packages serialization)
|
||||
#:use-module (gnu packages statistics)
|
||||
#:use-module (gnu packages swig)
|
||||
#:use-module (gnu packages tbb)
|
||||
#:use-module (gnu packages tex)
|
||||
#:use-module (gnu packages texinfo)
|
||||
|
@ -9426,3 +9427,50 @@ (define-public phylip
|
|||
(description "PHYLIP (the PHYLogeny Inference Package) is a package of
|
||||
programs for inferring phylogenies (evolutionary trees).")
|
||||
(license license:bsd-2)))
|
||||
|
||||
(define-public imp
|
||||
(package
|
||||
(name "imp")
|
||||
(version "2.6.2")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (string-append "https://integrativemodeling.org/"
|
||||
version "/download/imp-" version ".tar.gz"))
|
||||
(sha256
|
||||
(base32
|
||||
"0lxqx7vh79d771svr611dkilp6sn30qrbw8zvscbrm37v38d2j6h"))))
|
||||
(build-system cmake-build-system)
|
||||
(arguments
|
||||
`(;; FIXME: Some tests fail because they produce warnings, others fail
|
||||
;; because the PYTHONPATH does not include the modeller's directory.
|
||||
#:tests? #f
|
||||
;; Do not place libraries in an architecture-specific directory.
|
||||
#:configure-flags
|
||||
(list "-DCMAKE_INSTALL_LIBDIR=lib")))
|
||||
(inputs
|
||||
`(("boost" ,boost)
|
||||
("gsl" ,gsl)
|
||||
("swig" ,swig)
|
||||
("hdf5" ,hdf5)
|
||||
("fftw" ,fftw)
|
||||
("python" ,python-2)))
|
||||
(propagated-inputs
|
||||
`(("python2-numpy" ,python2-numpy)
|
||||
("python2-scipy" ,python2-scipy)
|
||||
("python2-pandas" ,python2-pandas)
|
||||
("python2-scikit-learn" ,python2-scikit-learn)
|
||||
("python2-networkx" ,python2-networkx)))
|
||||
(home-page "https://integrativemodeling.org")
|
||||
(synopsis "Integrative modeling platform")
|
||||
(description "IMP's broad goal is to contribute to a comprehensive
|
||||
structural characterization of biomolecules ranging in size and complexity
|
||||
from small peptides to large macromolecular assemblies, by integrating data
|
||||
from diverse biochemical and biophysical experiments. IMP provides a C++ and
|
||||
Python toolbox for solving complex modeling problems, and a number of
|
||||
applications for tackling some common problems in a user-friendly way.")
|
||||
;; IMP is largely available under the GNU Lesser GPL; see the file
|
||||
;; COPYING.LGPL for the full text of this license. Some IMP modules are
|
||||
;; available under the GNU GPL (see the file COPYING.GPL).
|
||||
(license (list license:lgpl2.1+
|
||||
license:gpl3+))))
|
||||
|
|
Loading…
Reference in a new issue