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gnu: bowtie1: Update to 1.3.1.

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* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.1.
[arguments]: Add test-target.
[inputs]: Use newer tbb.

Change-Id: I7af6aa248e5db9f91ce84fba9ba741621b110479
This commit is contained in:
Efraim Flashner 2024-02-28 11:34:03 +02:00
parent 8c0282cf54
commit aa1d419586
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1 changed files with 6 additions and 5 deletions
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gnu/packages/bioinformatics.scm
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@ -4,7 +4,7 @@
;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016, 2020, 2021 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016-2023 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016-2024 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016, 2020, 2022 Marius Bakke <marius@gnu.org>
;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
@ -3756,14 +3756,14 @@ (define-public bowtie
(define-public bowtie1
(package
(name "bowtie1")
(version "1.3.0")
(version "1.3.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/"
version "/bowtie-" version "-src.zip"))
(sha256
(base32
"11dbihdnrizc6qhx9xsw77w3q5ssx642alaqzvhxx32ak9glvq04"))
"0q87nhgj9wrnbazcpvqp4594hmyh1isi3s9b2wlghvl4afm1fdg2"))
(modules '((guix build utils)))
(snippet
'(substitute* "Makefile"
@ -3772,7 +3772,8 @@ (define-public bowtie1
(("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\"")))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; no "check" target
`(#:tests? #f ; Tests need various perl modules
#:test-target "simple-test"
#:make-flags
,#~(list "CC=gcc" "all"
(string-append "prefix=" #$output))
@ -3780,7 +3781,7 @@ (define-public bowtie1
(modify-phases %standard-phases
(delete 'configure))))
(inputs
(list python-wrapper tbb-2020 zlib))
(list python-wrapper tbb zlib))
(supported-systems '("x86_64-linux"))
(home-page "https://bowtie-bio.sourceforge.net/index.shtml")
(synopsis "Fast aligner for short nucleotide sequence reads")