ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-11-15 19:35:25 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: r-absseq: Move out of experiments section.

Browse source 
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
This commit is contained in:
Ricardo Wurmus 2022-04-14 13:34:11 +02:00
parent ed3697c040
commit aafd0d2309
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
1 changed files with 29 additions and 29 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

58
gnu/packages/bioconductor.scm
View file

@ -1102,35 +1102,6 @@ (define-public r-abadata
All datasets are restricted to protein coding genes.")
(license license:gpl2+)))
(define-public r-absseq
(package
(name "r-absseq")
(version "1.48.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "ABSSeq" version))
(sha256
(base32
"0l2hh6qv4lhw1g1kciw2f3ssj3lw83hqxnkmxzmv7snik3k6i650"))))
(properties `((upstream-name . "ABSSeq")))
(build-system r-build-system)
(propagated-inputs (list r-limma r-locfit))
(home-page "https://bioconductor.org/packages/ABSSeq")
(synopsis
"RNA-Seq analysis based on modelling absolute expression differences")
(description
"This package implements a new RNA-Seq analysis method and integrates two
modules: a basic model for pairwise comparison and a linear model for complex
design. RNA-Seq quantifies gene expression with reads count, which usually
consists of conditions (or treatments) and several replicates for each
condition. This software infers differential expression directly by the
counts difference between conditions. It assumes that the sum counts
difference between conditions follow a negative binomial distribution. In
addition, @code{ABSSeq} moderates the fold-changes by two steps: the
expression level and gene-specific dispersion, that might facilitate the gene
ranking by fold-change and visualization.")
(license license:gpl3+)))
(define-public r-aneufinderdata
(package
(name "r-aneufinderdata")
@ -1545,6 +1516,35 @@ (define-public r-abarray
into folders according to the analysis settings used.")
(license license:gpl2+)))
(define-public r-absseq
(package
(name "r-absseq")
(version "1.48.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "ABSSeq" version))
(sha256
(base32
"0l2hh6qv4lhw1g1kciw2f3ssj3lw83hqxnkmxzmv7snik3k6i650"))))
(properties `((upstream-name . "ABSSeq")))
(build-system r-build-system)
(propagated-inputs (list r-limma r-locfit))
(home-page "https://bioconductor.org/packages/ABSSeq")
(synopsis
"RNA-Seq analysis based on modelling absolute expression differences")
(description
"This package implements a new RNA-Seq analysis method and integrates two
modules: a basic model for pairwise comparison and a linear model for complex
design. RNA-Seq quantifies gene expression with reads count, which usually
consists of conditions (or treatments) and several replicates for each
condition. This software infers differential expression directly by the
counts difference between conditions. It assumes that the sum counts
difference between conditions follow a negative binomial distribution. In
addition, @code{ABSSeq} moderates the fold-changes by two steps: the
expression level and gene-specific dispersion, that might facilitate the gene
ranking by fold-change and visualization.")
(license license:gpl3+)))
(define-public r-aneufinder
(package
(name "r-aneufinder")