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gnu: Add r-fcscan.

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* gnu/packages/bioconductor.scm (r-fcscan): New variable.
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Ricardo Wurmus 2021-10-21 10:57:54 +00:00
parent a6ad219dd6
commit ac327cc7fc
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1 changed files with 31 additions and 0 deletions
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gnu/packages/bioconductor.scm
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@ -7331,6 +7331,37 @@ (define-public r-sigpathway
phenotype of interest.")
(license license:gpl2)))
(define-public r-fcscan
(package
(name "r-fcscan")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "fcScan" version))
(sha256
(base32 "10fcz741dr3wbb9f63qywlrays4cnvfnsm6yw4bmkrwk6ccijg8h"))))
(properties `((upstream-name . "fcScan")))
(build-system r-build-system)
(propagated-inputs
`(("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-plyr" ,r-plyr)
("r-rtracklayer" ,r-rtracklayer)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/fcScan")
(synopsis "Detect clusters of coordinates with user defined options")
(description
"This package is used to detect combination of genomic coordinates
falling within a user defined window size along with user defined overlap
between identified neighboring clusters. It can be used for genomic data
where the clusters are built on a specific chromosome or specific strand.
Clustering can be performed with a \"greedy\" option allowing thus the
presence of additional sites within the allowed window size.")
(license license:artistic2.0)))
(define-public r-fgsea
(package
(name "r-fgsea")