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gnu: Add python-drep.

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* gnu/packages/bioinformatics.scm (python-drep): New variable.
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Ricardo Wurmus 2021-03-15 11:38:29 +01:00
parent c20813bb08
commit ad34eb222c
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gnu/packages/bioinformatics.scm
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@ -13147,6 +13147,36 @@ (define-public python-bbknn
altering the counts or PCA space.")
(license license:expat)))
(define-public python-drep
(package
(name "python-drep")
(version "3.2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "drep" version))
(sha256
(base32
"08vk0x6v5c5n7afgd5pcjhsvb424absypxy22hw1cm1n9kirbi77"))))
(build-system python-build-system)
(propagated-inputs
`(("python-biopython" ,python-biopython)
("python-matplotlib" ,python-matplotlib)
("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-pytest" ,python-pytest)
("python-scikit-learn" ,python-scikit-learn)
("python-seaborn" ,python-seaborn)
("python-tqdm" ,python-tqdm)))
(home-page "https://github.com/MrOlm/drep")
(synopsis "De-replication of microbial genomes assembled from multiple samples")
(description
"dRep is a Python program for rapidly comparing large numbers of genomes.
dRep can also \"de-replicate\" a genome set by identifying groups of highly
similar genomes and choosing the best representative genome for each genome
set.")
(license license:expat)))
(define-public gffcompare
(let ((commit "be56ef4349ea3966c12c6397f85e49e047361c41")
(revision "1"))