gnu: Add python2-bx-python.

* gnu/packages/bioinformatics.scm (python2-bx-python): New variable.
This commit is contained in:
Ricardo Wurmus 2015-03-18 14:39:42 +01:00
parent 19ee920144
commit ad641d53de

View file

@ -285,6 +285,41 @@ (define-public bwa
70-100bp Illumina reads.")
(license license:gpl3+)))
(define-public python2-bx-python
(package
(name "python2-bx-python")
(version "0.7.2")
(source (origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/source/b/bx-python/bx-python-"
version ".tar.gz"))
(sha256
(base32
"0ld49idhc5zjdvbhvjq1a2qmpjj7h5v58rqr25dzmfq7g34b50xh"))
(modules '((guix build utils)))
(snippet
'(substitute* "setup.py"
;; remove dependency on outdated "distribute" module
(("^from distribute_setup import use_setuptools") "")
(("^use_setuptools\\(\\)") "")))))
(build-system python-build-system)
(arguments
`(#:tests? #f ;tests fail because test data are not included
#:python ,python-2))
(inputs
`(("python-numpy" ,python2-numpy)
("zlib" ,zlib)))
(native-inputs
`(("python-nose" ,python2-nose)
("python-setuptools" ,python2-setuptools)))
(home-page "http://bitbucket.org/james_taylor/bx-python/")
(synopsis "Tools for manipulating biological data")
(description
"bx-python provides tools for manipulating biological data, particularly
multiple sequence alignments.")
(license license:expat)))
(define-public clipper
(package
(name "clipper")