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gnu: Add r-fgsea.

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* gnu/packages/bioconductor.scm (r-fgsea): New variable.
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Ricardo Wurmus 2019-03-27 15:24:14 +01:00
parent 0d50d0df08
commit af26c7ae70
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gnu/packages/bioconductor.scm
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@ -2724,3 +2724,32 @@ (define-public r-sigpathway
specified group of genes for a pathway has a coordinated association with a
phenotype of interest.")
(license license:gpl2)))
(define-public r-fgsea
(package
(name "r-fgsea")
(version "1.8.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "fgsea" version))
(sha256
(base32
"0cxxvlmg340l5l5fz4abbwppiri0ibg4navvq5k3wg511mz8ma2q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocparallel" ,r-biocparallel)
("r-data-table" ,r-data-table)
("r-fastmatch" ,r-fastmatch)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)))
(home-page "https://github.com/ctlab/fgsea/")
(synopsis "Fast gene set enrichment analysis")
(description
"The package implements an algorithm for fast gene set enrichment
analysis. Using the fast algorithm allows to make more permutations and get
more fine grained p-values, which allows to use accurate stantard approaches
to multiple hypothesis correction.")
(license license:expat)))