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gnu: r-biostrings: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-biostrings): Move from here...
* gnu/packages/bioconductor.scm (r-biostrings): ...to here.
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zimoun 2021-03-15 19:09:02 +01:00 committed by Ricardo Wurmus
parent eab9807fb3
commit b1a19ab6e2
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2 changed files with 27 additions and 27 deletions
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27
gnu/packages/bioconductor.scm
View file

@ -1686,6 +1686,33 @@ (define-public r-biocparallel
objects.")
(license (list license:gpl2+ license:gpl3+))))
(define-public r-biostrings
(package
(name "r-biostrings")
(version "2.58.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "Biostrings" version))
(sha256
(base32
"1rbqhs73mhfr1gi0rx28jiyan7i3hb45ai3jpl1656fnrhgjfxq5"))))
(properties
`((upstream-name . "Biostrings")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-crayon" ,r-crayon)
("r-iranges" ,r-iranges)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)))
(home-page "https://bioconductor.org/packages/Biostrings")
(synopsis "String objects and algorithms for biological sequences")
(description
"This package provides memory efficient string containers, string
matching algorithms, and other utilities, for fast manipulation of large
biological sequences or sets of sequences.")
(license license:artistic2.0)))
(define-public r-category
(package
(name "r-category")

27
gnu/packages/bioinformatics.scm
View file

@ -7691,33 +7691,6 @@ (define-public bio-vcf
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-biostrings
(package
(name "r-biostrings")
(version "2.58.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "Biostrings" version))
(sha256
(base32
"1rbqhs73mhfr1gi0rx28jiyan7i3hb45ai3jpl1656fnrhgjfxq5"))))
(properties
`((upstream-name . "Biostrings")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-crayon" ,r-crayon)
("r-iranges" ,r-iranges)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)))
(home-page "https://bioconductor.org/packages/Biostrings")
(synopsis "String objects and algorithms for biological sequences")
(description
"This package provides memory efficient string containers, string
matching algorithms, and other utilities, for fast manipulation of large
biological sequences or sets of sequences.")
(license license:artistic2.0)))
(define-public r-rsamtools
(package
(name "r-rsamtools")