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gnu: Add bio-blastxmlparser.

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* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
This commit is contained in:
Pjotr Prins 2015-09-28 12:19:21 +02:00 committed by Ricardo Wurmus
parent 0e4e03f884
commit b2bddb07ef
1 changed files with 24 additions and 0 deletions
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24
gnu/packages/bioinformatics.scm
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@ -2733,6 +2733,30 @@ (define-public bio-locus
(home-page "https://github.com/pjotrp/bio-locus")
(license license:expat)))
(define-public bio-blastxmlparser
(package
(name "bio-blastxmlparser")
(version "2.0.4")
(source (origin
(method url-fetch)
(uri (rubygems-uri "bio-blastxmlparser" version))
(sha256
(base32
"1wf4qygcmdjgcqm6flmvsagfr1gs9lf63mj32qv3z1f481zc5692"))))
(build-system ruby-build-system)
(propagated-inputs
`(("ruby-bio-logger" ,ruby-bio-logger)
("ruby-nokogiri" ,ruby-nokogiri)))
(inputs
`(("ruby-rspec" ,ruby-rspec)))
(synopsis "Fast big data BLAST XML parser and library")
(description
"Very fast parallel big-data BLAST XML file parser which can be used as
command line utility. Use blastxmlparser to: Parse BLAST XML; filter output;
generate FASTA, JSON, YAML, RDF, JSON-LD, HTML, CSV, tabular output etc.")
(home-page "http://github.com/pjotrp/blastxmlparser")
(license license:expat)))
(define-public bioruby
(package
(name "bioruby")