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gnu: r-rgraphviz: Move to (gnu packages bioconductor).

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* gnu/packages/graph.scm (r-rgraphviz): Move from here...
* gnu/packages/bioconductor.scm (r-rgraphviz): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
zimoun 2020-09-14 18:07:38 +02:00 committed by Ricardo Wurmus
parent 6e0ab26f31
commit b3a998374c
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GPG key ID: 197A5888235FACAC
2 changed files with 38 additions and 38 deletions
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38
gnu/packages/bioconductor.scm
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@ -8308,3 +8308,41 @@ (define-public r-preprocesscore
"This package provides a library of core pre-processing and normalization
routines.")
(license license:lgpl2.0+)))
(define-public r-rgraphviz
(package
(name "r-rgraphviz")
(version "2.32.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rgraphviz" version))
(sha256
(base32
"1calpvzgcz6v7s4x6bf35kj83sga95zjp7x87p5d3qnbv7q2wz5y"))))
(properties `((upstream-name . "Rgraphviz")))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'make-reproducible
(lambda _
;; The replacement value is taken from src/graphviz/builddate.h
(substitute* "src/graphviz/configure"
(("VERSION_DATE=.*")
"VERSION_DATE=20200427.2341\n"))
#t)))))
;; FIXME: Rgraphviz bundles the sources of an older variant of
;; graphviz. It does not build with the latest version of graphviz, so
;; we do not add graphviz to the inputs.
(inputs `(("zlib" ,zlib)))
(propagated-inputs
`(("r-graph" ,r-graph)))
(native-inputs
`(("pkg-config" ,pkg-config)))
(home-page "https://bioconductor.org/packages/Rgraphviz")
(synopsis "Plotting capabilities for R graph objects")
(description
"This package interfaces R with the graphviz library for plotting R graph
objects from the @code{graph} package.")
(license license:epl1.0)))

38
gnu/packages/graph.scm
View file

@ -121,44 +121,6 @@ (define-public python-igraph
(home-page "https://pypi.org/project/python-igraph/")
(synopsis "Python bindings for the igraph network analysis library")))
(define-public r-rgraphviz
(package
(name "r-rgraphviz")
(version "2.32.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rgraphviz" version))
(sha256
(base32
"1calpvzgcz6v7s4x6bf35kj83sga95zjp7x87p5d3qnbv7q2wz5y"))))
(properties `((upstream-name . "Rgraphviz")))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'make-reproducible
(lambda _
;; The replacement value is taken from src/graphviz/builddate.h
(substitute* "src/graphviz/configure"
(("VERSION_DATE=.*")
"VERSION_DATE=20200427.2341\n"))
#t)))))
;; FIXME: Rgraphviz bundles the sources of an older variant of
;; graphviz. It does not build with the latest version of graphviz, so
;; we do not add graphviz to the inputs.
(inputs `(("zlib" ,zlib)))
(propagated-inputs
`(("r-graph" ,r-graph)))
(native-inputs
`(("pkg-config" ,pkg-config)))
(home-page "https://bioconductor.org/packages/Rgraphviz")
(synopsis "Plotting capabilities for R graph objects")
(description
"This package interfaces R with the graphviz library for plotting R graph
objects from the @code{graph} package.")
(license license:epl1.0)))
(define-public r-rbiofabric
(let ((commit "666c2ae8b0a537c006592d067fac6285f71890ac")
(revision "1"))