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gnu: Add r-scdd.

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* gnu/packages/bioconductor.scm (r-scdd): New variable.
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Ricardo Wurmus 2019-03-13 13:13:18 +01:00
parent 6213e44185
commit b409c3570f
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1 changed files with 36 additions and 0 deletions
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36
gnu/packages/bioconductor.scm
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@ -2047,3 +2047,39 @@ (define-public r-noiseq
differential expression between two experimental conditions with no parametric
assumptions.")
(license license:artistic2.0)))
(define-public r-scdd
(package
(name "r-scdd")
(version "1.6.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scDD" version))
(sha256
(base32
"0dp2awajd5281dwpbs0wb8ij2pq9l60p0b80xhxrb41m5qybcri8"))))
(properties `((upstream-name . "scDD")))
(build-system r-build-system)
(propagated-inputs
`(("r-arm" ,r-arm)
("r-biocparallel" ,r-biocparallel)
("r-ebseq" ,r-ebseq)
("r-fields" ,r-fields)
("r-ggplot2" ,r-ggplot2)
("r-mclust" ,r-mclust)
("r-outliers" ,r-outliers)
("r-s4vectors" ,r-s4vectors)
("r-scran" ,r-scran)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(home-page "https://github.com/kdkorthauer/scDD")
(synopsis "Mixture modeling of single-cell RNA-seq data")
(description
"This package implements a method to analyze single-cell RNA-seq data
utilizing flexible Dirichlet Process mixture models. Genes with differential
distributions of expression are classified into several interesting patterns
of differences between two conditions. The package also includes functions
for simulating data with these patterns from negative binomial
distributions.")
(license license:gpl2)))