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gnu: Add r-lea.
* gnu/packages/bioconductor.scm (r-lea): New variable.
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@ -7781,6 +7781,37 @@ (define-public r-keggrest
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@dfn{Kyoto Encyclopedia of Genes and Genomes} (KEGG) REST server.")
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(license license:artistic2.0)))
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(define-public r-lea
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(package
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(name "r-lea")
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(version "3.12.2")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "LEA" version))
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(sha256
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(base32
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"1kxrrl8pxhaipmzsw8gs4gs8g8xbp8169z9f7bcpgrfapnawafm9"))))
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(properties `((upstream-name . "LEA")))
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(build-system r-build-system)
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(native-inputs (list r-knitr))
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(home-page "http://membres-timc.imag.fr/Olivier.Francois/LEA/index.htm")
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(synopsis
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"R package for landscape and ecological association studies")
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(description
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"LEA is an R package dedicated to population genomics, landscape genomics
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and genotype-environment association tests. LEA can run analyses of
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population structure and genome-wide tests for local adaptation, and also
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performs imputation of missing genotypes. The package includes statistical
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methods for estimating ancestry coefficients from large genotypic matrices and
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for evaluating the number of ancestral populations (snmf). It performs
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statistical tests using latent factor mixed models for identifying genetic
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polymorphisms that exhibit association with environmental gradients or
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phenotypic traits (lfmm2). In addition, LEA computes values of genetic offset
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statistics based on new or predicted environments (@code{genetic.gap},
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@code{genetic.offset}). LEA is mainly based on optimized programs that can
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scale with the dimensions of large data sets.")
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(license license:gpl3)))
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(define-public r-lfa
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(package
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(name "r-lfa")
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