gnu: Add r-lea.

* gnu/packages/bioconductor.scm (r-lea): New variable.
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Ricardo Wurmus 2023-08-28 18:05:19 +02:00
parent 28e9d08364
commit b4c7fe02ae
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@ -7781,6 +7781,37 @@ (define-public r-keggrest
@dfn{Kyoto Encyclopedia of Genes and Genomes} (KEGG) REST server.")
(license license:artistic2.0)))
(define-public r-lea
(package
(name "r-lea")
(version "3.12.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "LEA" version))
(sha256
(base32
"1kxrrl8pxhaipmzsw8gs4gs8g8xbp8169z9f7bcpgrfapnawafm9"))))
(properties `((upstream-name . "LEA")))
(build-system r-build-system)
(native-inputs (list r-knitr))
(home-page "http://membres-timc.imag.fr/Olivier.Francois/LEA/index.htm")
(synopsis
"R package for landscape and ecological association studies")
(description
"LEA is an R package dedicated to population genomics, landscape genomics
and genotype-environment association tests. LEA can run analyses of
population structure and genome-wide tests for local adaptation, and also
performs imputation of missing genotypes. The package includes statistical
methods for estimating ancestry coefficients from large genotypic matrices and
for evaluating the number of ancestral populations (snmf). It performs
statistical tests using latent factor mixed models for identifying genetic
polymorphisms that exhibit association with environmental gradients or
phenotypic traits (lfmm2). In addition, LEA computes values of genetic offset
statistics based on new or predicted environments (@code{genetic.gap},
@code{genetic.offset}). LEA is mainly based on optimized programs that can
scale with the dimensions of large data sets.")
(license license:gpl3)))
(define-public r-lfa
(package
(name "r-lfa")