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gnu: pigx-scrnaseq: Update to 1.1.9.

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* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.9.
[arguments]: Remove 'autoreconf phase.
[native-inputs]: Remove autoconf and automake.
This commit is contained in:
Ricardo Wurmus 2022-06-01 12:57:22 +02:00
parent 93c97bfffb
commit b540e5e6bb
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GPG key ID: 197A5888235FACAC
1 changed files with 2 additions and 16 deletions
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18
gnu/packages/bioinformatics.scm
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@ -10679,7 +10679,7 @@ (define-public pigx-bsseq
(define-public pigx-scrnaseq
(package
(name "pigx-scrnaseq")
(version "1.1.8")
(version "1.1.9")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_scrnaseq/"
@ -10687,23 +10687,11 @@ (define-public pigx-scrnaseq
"/pigx_scrnaseq-" version ".tar.gz"))
(sha256
(base32
"1lc42hl8mz95kilh0z39s3wnv092mhm6vl2i394n0yfvdzk4f885"))))
"0adx7877c3lhlrzfid76i8bc829wcmzvrm0jx47gyid8mxqb7vqs"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-before 'bootstrap 'autoreconf
(lambda _
;; This was fixed in commit
;; c4ac067438ae9312b5786a72e2bfb3d795e3ec8a, but there is no
;; release with this fix.
(call-with-output-file "VERSION"
(lambda (port) (display ,version port)))
;; https://github.com/BIMSBbioinfo/pigx_scrnaseq/issues/59
(substitute* "m4/ax_r_package.m4"
(("if\\(is.na\\(packageDescription\\(\"PKG\"\\)\\)\\)")
"if(system.file(package=\"PKG\") == \"\")"))
(invoke "autoreconf" "-vif")))
(add-before 'configure 'set-additional-environment-variables
(lambda _
;; Needed because of loompy
@ -10752,8 +10740,6 @@ (define-public pigx-scrnaseq
r-singlecellexperiment
r-stringr
r-yaml))
(native-inputs
(list autoconf automake))
(home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipeline for single-cell RNA sequencing experiments")
(description