gnu: pigx-scrnaseq: Fix build.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Add autoreconf
step to work around m4 macro bug and missing VERSION file.
[native-inputs]: Add autoconf and automake.
This commit is contained in:
Ricardo Wurmus 2022-05-29 00:29:19 +02:00
parent add551f651
commit b64f4a1245
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@ -11258,8 +11258,20 @@ (define-public pigx-scrnaseq
"1lc42hl8mz95kilh0z39s3wnv092mhm6vl2i394n0yfvdzk4f885"))))
(build-system gnu-build-system)
(arguments
'(#:phases
`(#:phases
(modify-phases %standard-phases
(add-before 'bootstrap 'autoreconf
(lambda _
;; This was fixed in commit
;; c4ac067438ae9312b5786a72e2bfb3d795e3ec8a, but there is no
;; release with this fix.
(call-with-output-file "VERSION"
(lambda (port) (display ,version port)))
;; https://github.com/BIMSBbioinfo/pigx_scrnaseq/issues/59
(substitute* "m4/ax_r_package.m4"
(("if\\(is.na\\(packageDescription\\(\"PKG\"\\)\\)\\)")
"if(system.file(package=\"PKG\") == \"\")"))
(invoke "autoreconf" "-vif")))
(add-before 'configure 'set-additional-environment-variables
(lambda _
;; Needed because of loompy
@ -11308,6 +11320,8 @@ (define-public pigx-scrnaseq
r-singlecellexperiment
r-stringr
r-yaml))
(native-inputs
(list autoconf automake))
(home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipeline for single-cell RNA sequencing experiments")
(description