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gnu: python-dna-features-viewer: Update to 3.1.1.

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* gnu/packages/bioinformatics.scm (python-dna-features-viewer):
Update to 3.1.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add build phase to fix a compatibility problem with biopython.
[propagated-inputs]: Add python-packaging.
This commit is contained in:
Ricardo Wurmus 2022-12-10 14:39:57 +01:00
parent b66b6bdf70
commit b72df3bbb3
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1 changed files with 18 additions and 5 deletions
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gnu/packages/bioinformatics.scm
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@ -16597,18 +16597,31 @@ (define-public python-pybbi
(define-public python-dna-features-viewer (define-public python-dna-features-viewer
(package (package
(name "python-dna-features-viewer") (name "python-dna-features-viewer")
(version "3.0.3") (version "3.1.1")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "dna_features_viewer" version)) (uri (pypi-uri "dna_features_viewer" version))
(sha256 (sha256
(base32 (base32
"0vci6kg2id6r6rh3cifq7ccnh7j0mb8iqg3hji6rva0ayrdqzafc")))) "10a5pmh73spdgfml88zjqg1rn2j2zdxn06ir8a5q3arspyqvyqcb"))))
(build-system python-build-system) (build-system pyproject-build-system)
(arguments '(#:tests? #false)) ; there are none (arguments
(list
#:tests? #false ;there are none
#:phases
'(modify-phases %standard-phases
;; See https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer/issues/73
;; and https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer/pull/74
(add-after 'unpack 'fix-biopython-compatibility
(lambda _
(substitute* "dna_features_viewer/biotools.py"
(("zip\\(aa1 \\+ \"\\*\", aa3 \\+ \\[\"\\*\"\\]\\)")
"zip(aa1 + ('*',), aa3 + ('*',))")))))))
(propagated-inputs (propagated-inputs
(list python-biopython python-matplotlib)) (list python-biopython
python-matplotlib
python-packaging))
(home-page (home-page
"https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer") "https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer")
(synopsis "Plot features from DNA sequences") (synopsis "Plot features from DNA sequences")