mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2025-01-26 12:39:36 -05:00
gnu: Add bioparser.
* gnu/packages/bioinformatics.scm (bioparser): New variable.
This commit is contained in:
parent
4052310e91
commit
b8c9f061e1
1 changed files with 36 additions and 0 deletions
|
@ -1354,6 +1354,42 @@ (define-public biosoup
|
|||
used for storage and logging in bioinformatics tools.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public bioparser
|
||||
(package
|
||||
(name "bioparser")
|
||||
(version "3.0.13")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/rvaser/bioparser")
|
||||
;; Corresponds to tag 3.0.13
|
||||
(commit "13341e6e0855c6b358ffcea6dad216e1009e1287")))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"0c5p2dl8jb12ci9f427jzrmmm9cgvc1k4fxsn2ggkfsin6r1r82i"))))
|
||||
(build-system cmake-build-system)
|
||||
(arguments
|
||||
`(#:phases
|
||||
(modify-phases %standard-phases
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? #:allow-other-keys)
|
||||
(when tests?
|
||||
(invoke "./bin/bioparser_test")))))))
|
||||
(inputs
|
||||
`(("biosoup" ,biosoup)))
|
||||
(propagated-inputs
|
||||
`(("zlib" ,zlib)))
|
||||
(native-inputs
|
||||
`(("googletest" ,googletest)))
|
||||
(home-page "https://github.com/rvaser/bioparser")
|
||||
(synopsis "C++ library for parsing several formats in bioinformatics")
|
||||
(description "Bioparser is a C++ header only parsing library for several
|
||||
bioinformatics formats (FASTA/Q, MHAP/PAF/SAM), with support for zlib
|
||||
compressed files.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public ciri-long
|
||||
(package
|
||||
(name "ciri-long")
|
||||
|
|
Loading…
Reference in a new issue