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gnu: python-numpy: Update to 1.21.3 and cleanup.
* gnu/packages/python-xyz.scm (python-numpy): Update to 1.21.3.
[native-inputs]: Add python-hypothesis and python-pytest-xdist.
[phases]: Delete trailing #t. Do not explicitly reorder the check phase, as
it already runs after the install phase for the python build system.
{configure-blas-lapack}: Rename to...
{configure-blas}: ... this, to cleanup remnants of lapack left in commit
6623d1cd7f
.
{check}: Honor TESTS?. Invoke the tests via the runtests.py script and enable
parallel tests.
(python2-numpy-1.8)[phases]{configure-blas-lapack}: Likewise (as for the
python-numpy package).
This commit is contained in:
parent
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1 changed files with 24 additions and 37 deletions
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@ -5220,7 +5220,7 @@ (define-public python2-cython
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(define-public python-numpy
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(package
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(name "python-numpy")
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(version "1.17.3")
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(version "1.21.3")
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(source
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(origin
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(method url-fetch)
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@ -5229,38 +5229,32 @@ (define-public python-numpy
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version "/numpy-" version ".tar.gz"))
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(sha256
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(base32
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"1ak9dmjja0q90a7fsxli51ypcwssh8c4pb6f8wkrsnf2xgdk6dy9"))))
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"0s6hy8828yr7fcjiwnym4l8lrknr21gqfkaiawsf86n0hd0a5fyh"))))
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(build-system python-build-system)
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(inputs
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`(("openblas" ,openblas)))
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(native-inputs
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`(("python-cython" ,python-cython)
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("python-hypothesis" ,python-hypothesis)
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("python-pytest" ,python-pytest)
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("python-pytest-xdist" ,python-pytest-xdist)
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("gfortran" ,gfortran)))
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-before 'build 'configure-blas-lapack
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(add-before 'build 'configure-blas
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(lambda* (#:key inputs #:allow-other-keys)
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(call-with-output-file "site.cfg"
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(lambda (port)
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(format port
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"[openblas]
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"\
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[openblas]
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libraries = openblas
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library_dirs = ~a/lib
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include_dirs = ~a/include
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# backslash-n to make emacs happy
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\n[lapack]
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lapack_libs = lapack
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library_dirs = ~a/lib
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include_dirs = ~a/include
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"
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(assoc-ref inputs "openblas")
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(assoc-ref inputs "openblas")
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(assoc-ref inputs "lapack")
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(assoc-ref inputs "lapack"))))
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#t))
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(assoc-ref inputs "openblas"))))))
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(add-before 'build 'fix-executable-paths
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(lambda* (#:key inputs #:allow-other-keys)
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;; Make /gnu/store/...-bash-.../bin/sh the default shell,
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@ -5271,21 +5265,17 @@ (define-public python-numpy
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;; Use "gcc" executable, not "cc".
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(substitute* "numpy/distutils/system_info.py"
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(("c = distutils\\.ccompiler\\.new_compiler\\(\\)")
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"c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')"))
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#t))
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;; Tests can only be run after the library has been installed and not
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;; within the source directory.
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(delete 'check)
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(add-after 'install 'check
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(lambda* (#:key outputs inputs #:allow-other-keys)
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;; Make installed package available for running the tests
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(add-installed-pythonpath inputs outputs)
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;; Make sure "f2py" etc is found.
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(setenv "PATH" (string-append (assoc-ref outputs "out") "/bin"
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":" (getenv "PATH")))
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(with-directory-excursion "/tmp"
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(invoke "python" "-c"
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"import numpy; numpy.test(verbose=2)")))))))
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"c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')"))))
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(replace 'check
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(lambda* (#:key tests? outputs inputs #:allow-other-keys)
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(when tests?
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;; Make installed package available for running the tests.
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(add-installed-pythonpath inputs outputs)
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;; Make sure "f2py" etc is found.
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(setenv "PATH" (string-append (assoc-ref outputs "out") "/bin"
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":" (getenv "PATH")))
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(invoke "./runtests.py"
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"-j" (number->string (parallel-job-count)))))))))
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(home-page "https://numpy.org")
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(synopsis "Fundamental package for scientific computing with Python")
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(description "NumPy is the fundamental package for scientific computing
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@ -5332,21 +5322,18 @@ (define-public python2-numpy-1.8
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(substitute-keyword-arguments (package-arguments python2-numpy)
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((#:phases phases)
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`(modify-phases ,phases
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(replace 'configure-blas-lapack
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(replace 'configure-blas
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(lambda* (#:key inputs #:allow-other-keys)
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(call-with-output-file "site.cfg"
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(lambda (port)
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(format port
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"[openblas]
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libraries = openblas,lapack
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library_dirs = ~a/lib:~a/lib
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include_dirs = ~a/include:~a/include
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libraries = openblas
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library_dirs = ~a/lib
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include_dirs = ~a/include
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"
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(assoc-ref inputs "openblas")
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(assoc-ref inputs "lapack")
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(assoc-ref inputs "openblas")
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(assoc-ref inputs "lapack"))))
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#t))))))
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(assoc-ref inputs "openblas"))))))))))
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(native-inputs
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`(("python2-nose" ,python2-nose)))
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(description "NumPy is the fundamental package for scientific computing
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