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gnu: python-scipy: Update to 1.0.0.

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* gnu/packages/python.scm (python-scipy): Update to 1.0.0.
[arguments]: Remove obsolete FIX-TESTS-PHASE.  Override sphinxbuild in
INSTALL-DOC-PHASE.  Fix PYVER argument.  Use INVOKE instead of SYSTEM*.
[native-inputs]: Remove PYTHON-NOSE.  Add PYTHON-PYTEST and WHICH.
This commit is contained in:
Marius Bakke 2018-02-08 12:31:45 +01:00
parent 2c7f4ae561
commit ba62f087bc
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1 changed files with 15 additions and 16 deletions
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31
gnu/packages/python.scm
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@ -3533,14 +3533,14 @@ (define-public python-rpy2
(define-public python-scipy
(package
(name "python-scipy")
(version "0.19.1")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "scipy" version))
(sha256
(base32
"1rl411bvla6q7qfdb47fpdnyjhfgzl6smpha33n9ar1klykjr6m1"))))
"043djb3vyk6qripmyw30jhl0g8qza0fmar6wck10iv79l08izsl7"))))
(build-system python-build-system)
(propagated-inputs
`(("python-numpy" ,python-numpy)
@ -3551,11 +3551,12 @@ (define-public python-scipy
("openblas" ,openblas)))
(native-inputs
`(("python-cython" ,python-cython)
("python-nose" ,python-nose)
("python-pytest" ,python-pytest)
("python-sphinx" ,python-sphinx)
("python-numpydoc" ,python-numpydoc)
("gfortran" ,gfortran)
("perl" ,perl)))
("perl" ,perl)
("which" ,which)))
(outputs '("out" "doc"))
(arguments
`(#:phases
@ -3584,7 +3585,11 @@ (define-public python-scipy
(let* ((data (string-append (assoc-ref outputs "doc") "/share"))
(doc (string-append data "/doc/" ,name "-" ,version))
(html (string-append doc "/html"))
(pyver ,(string-append "PYVER=")))
(pyver ,(string-append "PYVER=" (version-major+minor
(package-version python))))
;; By default it tries to run sphinx-build through the Python
;; interpreter which won't work with our shell wrapper.
(sphinxbuild "SPHINXBUILD=LANG=C sphinx-build"))
;; Make installed package available for building the
;; documentation
(add-installed-pythonpath inputs outputs)
@ -3594,7 +3599,7 @@ (define-public python-scipy
(("pngmath_use_preview = True")
"pngmath_use_preview = False"))
(mkdir-p html)
(system* "make" "html" pyver)
(invoke "make" "html" pyver sphinxbuild)
(with-directory-excursion "build/html"
(for-each (lambda (file)
(let* ((dir (dirname file))
@ -3602,21 +3607,15 @@ (define-public python-scipy
(install-file file html)))
(find-files "." ".*")))))
#t))
(add-after 'unpack 'fix-tests
(lambda _
(substitute* "scipy/integrate/tests/test_quadpack.py"
(("libm.so") "libm.so.6"))
#t))
;; Tests can only be run after the library has been installed and not
;; within the source directory.
;; Tests can only be run after the library has been installed and not
;; within the source directory.
(delete 'check)
(add-after 'install 'check
(lambda* (#:key inputs outputs #:allow-other-keys)
(add-installed-pythonpath inputs outputs)
(with-directory-excursion "/tmp"
(zero? (system* "python" "-c"
"import scipy; scipy.test('full')")))
#t)))))
(invoke "python" "-c"
"import scipy; scipy.test('full', verbose=2)")))))))
(home-page "https://www.scipy.org/")
(synopsis "The Scipy library provides efficient numerical routines")
(description "The SciPy library is one of the core packages that make up